Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060687.seq
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    38   6e-05
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    38   6e-05
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 270 FPIDTTKTRLQIQGQKIDPRHVELRYTGMVDCIIKTSKQEGVKALYCGIWPAVLRQATYG 449
           +P+D  +TRL     K      E  +TG+ +C+ K  K +G+  LY G   +V     Y 
Sbjct: 134 YPLDFARTRLAADVGKAGG---EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYR 190

Query: 450 TIKFGTYYTLKNAL 491
              FG Y T +  L
Sbjct: 191 AAYFGFYDTARGML 204



 Score = 33.9 bits (74), Expect = 0.001
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 273 PIDTTKTRLQIQGQKIDPRHVELRYTGMVDCIIKTSKQEGVKALYCGIWPAVLR 434
           PI+  K  LQ+Q         E RY GM+DC ++  K++G  + + G    V+R
Sbjct: 30  PIERVKLLLQVQHISKQISE-EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 270 FPIDTTKTRLQIQGQKIDPRHVELRYTGMVDCIIKTSKQEGVKALYCGIWPAVLRQATYG 449
           +P+D  +TRL     K      E  +TG+ +C+ K  K +G+  LY G   +V     Y 
Sbjct: 134 YPLDFARTRLAADVGKAGG---EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYR 190

Query: 450 TIKFGTYYTLKNAL 491
              FG Y T +  L
Sbjct: 191 AAYFGFYDTARGML 204



 Score = 33.9 bits (74), Expect = 0.001
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 273 PIDTTKTRLQIQGQKIDPRHVELRYTGMVDCIIKTSKQEGVKALYCGIWPAVLR 434
           PI+  K  LQ+Q         E RY GM+DC ++  K++G  + + G    V+R
Sbjct: 30  PIERVKLLLQVQHISKQISE-EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -3

Query: 412 PQYKALTPSCLEVLMMQSTIPVYRSST*RGSIFCPWI*RRVLVVSI 275
           P++  +TP    ++    T+   +  T   ++  PWI +R  V S+
Sbjct: 134 PEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRERVASV 179


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 187 CISRVMGERNWRPFIYGGLASIV 255
           C + V   + W PF +GG+  +V
Sbjct: 548 CSAPVWRFQPWGPFTWGGIGVVV 570


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 454 IVPYVACRSTAGQMPQYKALT 392
           I  Y  C  T+  MP   ALT
Sbjct: 793 ITKYTGCELTSESMPLQSALT 813


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 91  SNYRIFFTYKCYW 53
           SN  +F  YK YW
Sbjct: 559 SNSAVFTNYKLYW 571


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 454 IVPYVACRSTAGQMPQYKALT 392
           I  Y  C  T+  MP   ALT
Sbjct: 883 ITKYTGCELTSESMPLQSALT 903


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 462 GTYYTLKNALAKRRAEVERRSTSLRTLSV 548
           G YY ++++  K       R T L  LSV
Sbjct: 587 GNYYKIRDSKVKTLDASHNRITELSPLSV 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,493
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)