Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060684.seq
(604 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D561AA Cluster: PREDICTED: similar to RAB3 GTPas... 63 4e-09
UniRef50_Q7Q3E9 Cluster: ENSANGP00000002278; n=7; Culicidae|Rep:... 54 3e-06
UniRef50_UPI000051A9B5 Cluster: PREDICTED: similar to Rab3 GTPas... 54 3e-06
UniRef50_Q15042 Cluster: Rab3 GTPase-activating protein catalyti... 44 0.003
UniRef50_A7RGH8 Cluster: Predicted protein; n=1; Nematostella ve... 43 0.006
UniRef50_Q9VQ26 Cluster: Rab3 GTPase-activating protein catalyti... 41 0.026
UniRef50_A0CJ25 Cluster: Chromosome undetermined scaffold_19, wh... 32 9.1
>UniRef50_UPI0000D561AA Cluster: PREDICTED: similar to RAB3
GTPase-activating protein; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to RAB3 GTPase-activating protein -
Tribolium castaneum
Length = 490
Score = 63.3 bits (147), Expect = 4e-09
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +3
Query: 84 MNEXIDEYDIYHQDFTTVSEWEVFVARIEEVLIDWR 191
MNE IDE + YHQDFTT SEWE+F+ARIEE++ W+
Sbjct: 1 MNEEIDETEFYHQDFTTASEWEIFIARIEEIINQWK 36
Score = 38.3 bits (85), Expect = 0.14
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 511 LVMSSLXIAFANVDCGVPLFVTIREHWQHTY 603
+++SS+ +A AN C P+FV IRE WQ+ Y
Sbjct: 142 VLLSSVYVASANSKCETPIFVQIREKWQNCY 172
>UniRef50_Q7Q3E9 Cluster: ENSANGP00000002278; n=7; Culicidae|Rep:
ENSANGP00000002278 - Anopheles gambiae str. PEST
Length = 480
Score = 54.0 bits (124), Expect = 3e-06
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +3
Query: 84 MNEXIDEYDIYHQDFTTVSEWEVFVARIEEVLIDWRLSKSTMVKHSVENH 233
+NE +D+ + + QDFTT S+WE+F AR+EE+ +W+LS + +H
Sbjct: 2 LNEEVDDTEFFQQDFTTASDWELFNARLEEIFHEWKLSFGQTTFRKLAHH 51
>UniRef50_UPI000051A9B5 Cluster: PREDICTED: similar to Rab3
GTPase-activating protein catalytic subunit; n=2; Apis
mellifera|Rep: PREDICTED: similar to Rab3
GTPase-activating protein catalytic subunit - Apis
mellifera
Length = 899
Score = 53.6 bits (123), Expect = 3e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +3
Query: 108 DIYHQDFTTVSEWEVFVARIEEVLIDWRL 194
D YH DFTT SEWEVF+AR+EE++ +W+L
Sbjct: 8 DFYHHDFTTASEWEVFIARLEEIMHEWKL 36
Score = 35.1 bits (77), Expect = 1.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 511 LVMSSLXIAFANVDCGVPLFVTIREHWQHTY 603
+++SSL IA N +C +P V ++E WQ Y
Sbjct: 146 ILLSSLAIAATNANCDIPALVQVQEPWQKMY 176
>UniRef50_Q15042 Cluster: Rab3 GTPase-activating protein catalytic
subunit; n=33; Deuterostomia|Rep: Rab3 GTPase-activating
protein catalytic subunit - Homo sapiens (Human)
Length = 981
Score = 44.0 bits (99), Expect = 0.003
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +3
Query: 123 DFTTVSEWEVFVARIEEVLIDWRLSKSTMVK 215
DFTT SEWE F++++EEVL DW+L +++ K
Sbjct: 16 DFTTASEWERFISKVEEVLNDWKLIGNSLGK 46
Score = 36.3 bits (80), Expect = 0.56
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 511 LVMSSLXIAFANVDCGVPLFVTIREHWQHTY 603
L++SS+ IA N C VPLFV I W+ Y
Sbjct: 147 LLLSSVSIALGNTGCQVPLFVQIHHKWRRMY 177
>UniRef50_A7RGH8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 950
Score = 42.7 bits (96), Expect = 0.006
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +3
Query: 123 DFTTVSEWEVFVARIEEVLIDWRLS 197
DFTT SEWE F+AR+EEVL +W L+
Sbjct: 9 DFTTASEWERFIARLEEVLHEWMLA 33
Score = 35.1 bits (77), Expect = 1.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 511 LVMSSLXIAFANVDCGVPLFVTIREHWQHTY 603
L++SS+ IAF N C +P+F+ + W+ Y
Sbjct: 139 LLLSSIAIAFNNSKCEIPMFIQAHQRWRRLY 169
>UniRef50_Q9VQ26 Cluster: Rab3 GTPase-activating protein catalytic
subunit; n=4; Sophophora|Rep: Rab3 GTPase-activating
protein catalytic subunit - Drosophila melanogaster
(Fruit fly)
Length = 916
Score = 40.7 bits (91), Expect = 0.026
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +3
Query: 84 MNEXIDEYDIYHQDFTTVSEWEVFVARIEEVLIDWRLSKSTMVKH 218
M E ID+ + Y ++F+ S+WEVF A++ E+L W +S + ++
Sbjct: 1 MAEEIDDNEFYRENFSADSDWEVFNAQLGEILQKWDVSSDSETRN 45
>UniRef50_A0CJ25 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 528
Score = 32.3 bits (70), Expect = 9.1
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 87 NEXIDEYDIYHQDFTTVSEWEVFVARIEEVLID-WRLSKSTMVKHSVE 227
NE ++HQ+ +E +++ ARI+++ ID WR++ H ++
Sbjct: 143 NEYSKSLSVWHQNIFKYTEMQIYGARIQDICIDRWRIAVLLPKMHHIQ 190
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,408,633
Number of Sequences: 1657284
Number of extensions: 7946064
Number of successful extensions: 19628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19626
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -