Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060684.seq
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.1  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 356 MIYHLILQCFLVYFYS 309
           +I+HLIL   L+YF S
Sbjct: 46  IIFHLILFAVLLYFAS 61


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 156 VARIEEVLIDWRLSK 200
           +AR+EEV+ D  LSK
Sbjct: 191 MARVEEVISDLALSK 205


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 156 VARIEEVLIDWRLSK 200
           +AR+EEV+ D  LSK
Sbjct: 191 MARVEEVISDLALSK 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,756
Number of Sequences: 336
Number of extensions: 2247
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)