Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060684.seq
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    29   3.7  
08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790     28   6.5  
04_03_0213 + 12709396-12709564,12709659-12710217,12710312-127106...    28   6.5  
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425...    28   6.5  
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    27   8.7  

>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 123 DFTTVSEWEVFVARIEEVLIDW 188
           DFT  S WE F++ IE +   W
Sbjct: 43  DFTIASSWERFISEIEAICRQW 64


>08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790
          Length = 317

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 260 LRFCKPFFCMIFNRMLNHCGFRQSPINQ 177
           LR CK  F + FN + N   F+Q  +N+
Sbjct: 64  LRLCKRSFKLSFNNLANPTAFQQGAVNR 91


>04_03_0213 +
           12709396-12709564,12709659-12710217,12710312-12710606,
           12710688-12710786,12710864-12711203,12711571-12711812
          Length = 567

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 72  VDLXMNEXIDEYDIYHQDFTTVSEWEVF 155
           VDL  N+ + ++  YHQD   +++WE F
Sbjct: 244 VDLRKNKKVTDWAYYHQDH--ITQWEKF 269


>01_01_0573 +
           4253484-4254653,4255526-4255735,4255842-4255937,
           4256034-4256255,4256829-4257023,4257097-4257243,
           4257323-4257472,4257762-4257892,4257978-4258194
          Length = 845

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 105 YDIYHQDFTTVSEWEVFVARIEEVLIDW 188
           YD Y+ DF T  + E F+A+++EV  DW
Sbjct: 633 YDKYN-DFVTAEDKEAFIAKLQEV-EDW 658


>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 329 FLVYFYSSYNYKKE*ISVLDSLFLRFCKPFFCMIFNRMLNH 207
           F  Y    Y+ K +  + +DS F RF   +FC + + +  H
Sbjct: 73  FNFYIACCYDNKLKEAAKIDSSFTRFSTKYFCRVISALSPH 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,247
Number of Sequences: 37544
Number of extensions: 206264
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)