Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060684.seq
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42975| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.044
SB_48822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)                    28   6.7  
SB_31584| Best HMM Match : MreD (HMM E-Value=1.7)                      28   6.7  
SB_19627| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6)                   27   8.8  

>SB_42975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 511 LVMSSLXIAFANVDCGVPLFVTIREHWQHTY 603
           L++SS+ IAF N  C +P+F+   + W+  Y
Sbjct: 143 LLLSSIAIAFNNSKCEIPMFIQAHQRWRRLY 173


>SB_48822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 196 LNPQWLSILLKIMQKNGLQKRRNKLSR 276
           +NP W  ILL  M+ +  +K++NK +R
Sbjct: 15  VNPTWTEILLNRMKYSKYEKKKNKQTR 41


>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
          Length = 947

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 332 TEESSDKSLLVEIQDGLWEATTRFMDDSDESPF 430
           T+ESS+  LLV+   G     + F D    SPF
Sbjct: 836 TDESSESGLLVDSGSGSGSKESGFADSESSSPF 868


>SB_31584| Best HMM Match : MreD (HMM E-Value=1.7)
          Length = 182

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 386 PKVHLGFRPTMIYHLILQCFLVYFYSSYNYKKE*ISVLDSLFLRFCKPFF 237
           P  +  F P ++  +  +CF+ YFY  + Y+     VLD +F     P F
Sbjct: 99  PMFYWVFLPDVLSGIFTRCFIGYFYPVF-YRVFLPDVLDPMFYWVIYPIF 147


>SB_19627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 386 PKVHLGFRPTMIYHLILQCFLVYFYSSYNYKKE*ISVLDSLFLR-FCKPFFCMIFNRMLN 210
           P  +  F P ++  +  +CF+ YFY  + Y+     +L  +F R F + F+ M    +L+
Sbjct: 24  PMFYRVFLPDVLSGIFTRCFIGYFYPMF-YRVFLPDILSGIFTRCFIRYFYPMFLPDVLS 82


>SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 368 FRPTMIYHLILQCFLVYFYSSYNYKKE*ISVLDSLFLRFCKPFF 237
           F P ++  +  +CF+ YFY  + Y+     VL  +F R   P F
Sbjct: 26  FLPDVLSGIFTRCFIGYFYPIF-YRVFLPDVLSGIFTRCFYPMF 68


>SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6)
          Length = 490

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 347 DKSLLVEIQDGLWEATTRF 403
           DK +LV IQD  WE  T+F
Sbjct: 321 DKIVLVAIQDAAWEQLTKF 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,202
Number of Sequences: 59808
Number of extensions: 259322
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)