Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060684.seq
(604 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D31886-1|BAA06684.1| 981|Homo sapiens KIAA0066 protein. 44 4e-04
BC146809-1|AAI46810.1| 935|Homo sapiens RAB3GAP1 protein protein. 36 0.083
U72899-1|AAD00183.1| 194|Homo sapiens LIM protein MLP protein. 29 9.5
U72898-1|AAD00189.1| 194|Homo sapiens LIM protein MLP protein. 29 9.5
U49837-1|AAA92571.1| 194|Homo sapiens LIM protein MLP protein. 29 9.5
U20324-1|AAA91104.1| 194|Homo sapiens LIM domain protein protein. 29 9.5
EF179182-1|ABN05285.1| 194|Homo sapiens cysteine and glycine-ri... 29 9.5
BC057221-1|AAH57221.1| 194|Homo sapiens cysteine and glycine-ri... 29 9.5
BC024010-1|AAH24010.1| 194|Homo sapiens cysteine and glycine-ri... 29 9.5
BC005900-1|AAH05900.1| 194|Homo sapiens cysteine and glycine-ri... 29 9.5
AF121260-1|AAF28868.1| 194|Homo sapiens myogenic factor LIM3 pr... 29 9.5
>D31886-1|BAA06684.1| 981|Homo sapiens KIAA0066 protein.
Length = 981
Score = 44.0 bits (99), Expect = 4e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +3
Query: 123 DFTTVSEWEVFVARIEEVLIDWRLSKSTMVK 215
DFTT SEWE F++++EEVL DW+L +++ K
Sbjct: 16 DFTTASEWERFISKVEEVLNDWKLIGNSLGK 46
Score = 36.3 bits (80), Expect = 0.083
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 511 LVMSSLXIAFANVDCGVPLFVTIREHWQHTY 603
L++SS+ IA N C VPLFV I W+ Y
Sbjct: 147 LLLSSVSIALGNTGCQVPLFVQIHHKWRRMY 177
Score = 29.9 bits (64), Expect = 7.2
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +2
Query: 251 KSEEISYQGQKFTLSYNYMNCKSKPESTEESSDKSLLVEIQDGLWEATTRFMDDSDESPF 430
KS+EIS+ KF+++++Y+ EST++ LL ++ + +D
Sbjct: 61 KSDEISFADFKFSVTHHYL----VQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAH 116
Query: 431 PVSNWXGLXQYXMXYP 478
+ W GL ++ + P
Sbjct: 117 CLVRWYGLREFVVIAP 132
>BC146809-1|AAI46810.1| 935|Homo sapiens RAB3GAP1 protein protein.
Length = 935
Score = 36.3 bits (80), Expect = 0.083
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 511 LVMSSLXIAFANVDCGVPLFVTIREHWQHTY 603
L++SS+ IA N C VPLFV I W+ Y
Sbjct: 103 LLLSSVSIALGNTGCQVPLFVQIHHKWRRMY 133
Score = 29.9 bits (64), Expect = 7.2
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +2
Query: 251 KSEEISYQGQKFTLSYNYMNCKSKPESTEESSDKSLLVEIQDGLWEATTRFMDDSDESPF 430
KS+EIS+ KF+++++Y+ EST++ LL ++ + +D
Sbjct: 17 KSDEISFADFKFSVTHHYL----VQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAH 72
Query: 431 PVSNWXGLXQYXMXYP 478
+ W GL ++ + P
Sbjct: 73 CLVRWYGLREFVVIAP 88
>U72899-1|AAD00183.1| 194|Homo sapiens LIM protein MLP protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>U72898-1|AAD00189.1| 194|Homo sapiens LIM protein MLP protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>U49837-1|AAA92571.1| 194|Homo sapiens LIM protein MLP protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>U20324-1|AAA91104.1| 194|Homo sapiens LIM domain protein protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>EF179182-1|ABN05285.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>BC057221-1|AAH57221.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>BC024010-1|AAH24010.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>BC005900-1|AAH05900.1| 194|Homo sapiens cysteine and glycine-rich
protein 3 (cardiac LIM protein) protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHES 54
>AF121260-1|AAF28868.1| 194|Homo sapiens myogenic factor LIM3
protein.
Length = 194
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 230 SCKKMVYKSEEISYQGQKF-TLSYNYMNCKSKPESTEESSDKS 355
+C+K VY +EEI G+ F ++ M C+ +ST ++ +S
Sbjct: 12 ACEKTVYHAEEIQCHGRSFHKTCFHCMACRKALDSTTVAAHES 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,751,315
Number of Sequences: 237096
Number of extensions: 1220952
Number of successful extensions: 6399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6399
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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