Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060684.seq
         (604 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094807-1|AAM11160.1|  572|Drosophila melanogaster LD27273p pro...    41   0.001
AE014134-270|AAF51356.2|  916|Drosophila melanogaster CG31935-PA...    41   0.001
AY119202-1|AAM51062.1|  500|Drosophila melanogaster SD13634p pro...    29   6.4  
AF398410-1|AAK97480.1|  500|Drosophila melanogaster skinny hedge...    29   6.4  
AF393157-1|AAK73748.1|  500|Drosophila melanogaster sightless pr...    29   6.4  
AE014296-575|AAF47725.1|  500|Drosophila melanogaster CG11495-PA...    29   6.4  

>AY094807-1|AAM11160.1|  572|Drosophila melanogaster LD27273p
           protein.
          Length = 572

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = +3

Query: 84  MNEXIDEYDIYHQDFTTVSEWEVFVARIEEVLIDWRLSKSTMVKH 218
           M E ID+ + Y ++F+  S+WEVF A++ E+L  W +S  +  ++
Sbjct: 1   MAEEIDDNEFYRENFSADSDWEVFNAQLGEILQKWDVSSDSETRN 45


>AE014134-270|AAF51356.2|  916|Drosophila melanogaster CG31935-PA
           protein.
          Length = 916

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = +3

Query: 84  MNEXIDEYDIYHQDFTTVSEWEVFVARIEEVLIDWRLSKSTMVKH 218
           M E ID+ + Y ++F+  S+WEVF A++ E+L  W +S  +  ++
Sbjct: 1   MAEEIDDNEFYRENFSADSDWEVFNAQLGEILQKWDVSSDSETRN 45


>AY119202-1|AAM51062.1|  500|Drosophila melanogaster SD13634p
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 395 SWLPKVHLGFRPTMIYHLILQCFLVYFYSSYNYKK-E*ISVLDSLFLRFCKPFF 237
           +WL  V  G   + I+ L++QC L YFY  Y  +    + ++DS+F +    +F
Sbjct: 241 NWLGFVG-GVLRSAIWWLVMQCALHYFYIHYMSRDVRMVEMMDSVFWQHSAGYF 293


>AF398410-1|AAK97480.1|  500|Drosophila melanogaster skinny hedgehog
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 395 SWLPKVHLGFRPTMIYHLILQCFLVYFYSSYNYKK-E*ISVLDSLFLRFCKPFF 237
           +WL  V  G   + I+ L++QC L YFY  Y  +    + ++DS+F +    +F
Sbjct: 241 NWLGFVG-GVLRSAIWWLVMQCALHYFYIHYMSRDVRMVEMMDSVFWQHSAGYF 293


>AF393157-1|AAK73748.1|  500|Drosophila melanogaster sightless
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 395 SWLPKVHLGFRPTMIYHLILQCFLVYFYSSYNYKK-E*ISVLDSLFLRFCKPFF 237
           +WL  V  G   + I+ L++QC L YFY  Y  +    + ++DS+F +    +F
Sbjct: 241 NWLGFVG-GVLRSAIWWLVMQCALHYFYIHYMSRDVRMVEMMDSVFWQHSAGYF 293


>AE014296-575|AAF47725.1|  500|Drosophila melanogaster CG11495-PA
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 395 SWLPKVHLGFRPTMIYHLILQCFLVYFYSSYNYKK-E*ISVLDSLFLRFCKPFF 237
           +WL  V  G   + I+ L++QC L YFY  Y  +    + ++DS+F +    +F
Sbjct: 241 NWLGFVG-GVLRSAIWWLVMQCALHYFYIHYMSRDVRMVEMMDSVFWQHSAGYF 293


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,751,204
Number of Sequences: 53049
Number of extensions: 368746
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)