Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060684.seq
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39850.1 68415.m04894 subtilase family protein contains simil...    30   1.0  
At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapien...    28   4.1  
At1g10090.1 68414.m01137 expressed protein                             27   7.2  
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam...    27   9.6  

>At2g39850.1 68415.m04894 subtilase family protein contains
           similarity to subtilisin-like protease C1 GI:13325079
           from [Glycine max]
          Length = 774

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 287 TLSYNYMNCKSKPESTEESSDKSLLVEIQDGLWEATTRFMDDSDESP 427
           T S+++MN   K E   E+    ++  I  G+W  +  F  DS   P
Sbjct: 107 TRSWDFMNLTLKAERNPENESDLVVAVIDSGIWPYSELFGSDSPPPP 153


>At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapiens,
           EMBL:HSORFKG1O
          Length = 963

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 102 EYDIYH-QDFTTVSEWEVFVARIEEVLIDW 188
           E ++ H  DFT  S WE F++ IE     W
Sbjct: 17  EEEVQHFDDFTLASSWERFISDIEATCRQW 46


>At1g10090.1 68414.m01137 expressed protein 
          Length = 762

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 374 LGFRPTMIYHLILQCFLVYFYSSY-NYKKE*ISV 276
           LGF  ++I  LIL   L+YF+ +Y  YK + I+V
Sbjct: 551 LGFTNSVIAPLILPFLLIYFFFAYLIYKNQIINV 584


>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 252

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 321 NQKALKNQVINHCWSKSKMDFGKPR 395
           N K  K+Q  NH  S+SK   GKPR
Sbjct: 140 NAKQSKDQSANHNSSRSKSSGGKPR 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,709,447
Number of Sequences: 28952
Number of extensions: 185654
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)