Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060683.seq
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    24   1.2  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   3.8  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   8.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.7  

>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 252 KTSVYDHHFTEIIFHPTS 199
           +T VY H+F + IF+P +
Sbjct: 126 ETDVYTHNFVKDIFYPAN 143


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 253 LVDFLEDTEKLRPAALFYFPAFVHFHRY*TVNK 351
           LVDF      +   + F+ P+FV   R   V+K
Sbjct: 204 LVDFKSVIRSISVFSFFFMPSFVDIFRLTFVDK 236


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 287 RNFSVSSKKSTKKPQYMTTIL 225
           +NF +  K  TKKP  +  +L
Sbjct: 32  KNFRLCKKHKTKKPVQILALL 52


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 287 RNFSVSSKKSTKKPQYMTTIL 225
           +NF +  K  TKKP  +  +L
Sbjct: 32  KNFRLCKKHKTKKPVQILALL 52


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 263 KSTKKPQYMTTILLRLYFIPHHLISF 186
           ++TKK Q++ T   R+  IP+ L  F
Sbjct: 293 RNTKKLQWLDTSHNRISEIPNDLFRF 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,369
Number of Sequences: 336
Number of extensions: 2981
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)