Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060683.seq
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    27   2.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.0  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.3  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 272 SSKKSTKKPQYMTTILLRLYFIPHHLISFHLISSQLI 162
           +SK  T  PQ+  T+L  + F+P   ++ H +   L+
Sbjct: 491 TSKIETSLPQFTATLLPEITFVPSITVTTHYVLPTLL 527


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 553  FFLLPTPKVRVFLPLYREESVTFSPWV 633
            + L P PK+ +  P+Y+ E+VT   W+
Sbjct: 1213 YHLTPIPKIDIRYPIYK-ENVTIHTWM 1238


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 335 IKQLINHRYFTFKPEATLNRQ--NKTNHTTSLLAFPPKSPEP 454
           +++ +N  +    P A  N++  N    T SLL FPP S  P
Sbjct: 134 VERCLNFAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSP 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,352
Number of Sequences: 5004
Number of extensions: 46353
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)