Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060683.seq
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1214 + 28469848-28473048                                         28   5.4  
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944...    27   9.5  
07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488...    27   9.5  
03_06_0740 + 35889894-35890982                                         27   9.5  

>06_03_1214 + 28469848-28473048
          Length = 1066

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = -2

Query: 607 LPCTAGGKLELSA*VGEKIRFFXFIIKLCLSFTIKKVNLSLCRTEREDNLIWFRTFWRER 428
           LPC++      +      + FF  ++ L LSF       S C  + E +LI F       
Sbjct: 6   LPCSSSSSTTTTTTTKLSVAFFRLLVILLLSFASP---TSSCTEQEESSLIGFLEGLLPG 62

Query: 427 EE*SCVISFILSI*CC 380
              S   S++  I CC
Sbjct: 63  HNGSLSTSWVKGIDCC 78


>11_06_0543 +
           24792110-24792229,24792316-24792521,24793770-24794462,
           24794538-24794717,24794793-24795084,24795166-24795375
          Length = 566

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 251 KPQYMTTILLRLYFIPHH-LISFHLISSQLI 162
           K Q M TILL  +F PH  LI+ HL  S+++
Sbjct: 386 KLQDMNTILLPYHFKPHWILIAIHLNDSKIV 416


>07_03_0462 +
           18444928-18444999,18446948-18447985,18448015-18448845,
           18449112-18449120
          Length = 649

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 513 NDKHSFIIKXKKRIFSPTYAESSSFPPAVQGRKCDFFSLG 632
           ND+H+  +   K    P Y E+    P     KCD +S G
Sbjct: 229 NDEHTGFVIGSKGYMDPVYCETGRLSP-----KCDVYSFG 263


>03_06_0740 + 35889894-35890982
          Length = 362

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 251 KPQYMTTILLRLYFIPHHL 195
           +P ++T  LLR Y  PHHL
Sbjct: 26  RPDHLTPTLLRRYLRPHHL 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,130
Number of Sequences: 37544
Number of extensions: 291716
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)