Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060683.seq
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07350.1 68417.m01129 hypothetical protein                          28   6.0  
At1g79110.2 68414.m09225 expressed protein                             27   7.9  

>At4g07350.1 68417.m01129 hypothetical protein
          Length = 330

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +2

Query: 293 RLCFIFPPLCTFTDIKQLINHRYF------TFKPEATLNRQNKTNHTTSLLAFPPKSPEP 454
           RL +  PP+  + D+K+L+ ++Y       + K   T   +N+      L+   P  P P
Sbjct: 142 RLYYKEPPITLWRDLKELLRNKYALQASNRSRKVSVTAQGENELVTNNVLIQNEPPDPTP 201

Query: 455 NEIILPLCST 484
             +++ + ST
Sbjct: 202 LPLVMMIPST 211


>At1g79110.2 68414.m09225 expressed protein
          Length = 355

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 357 VISHLNLKQH*IDKIKLITQLHSSRSRQKVRNQMRLSSRSVLHS 488
           + SH+N +QH ID+      LH  R + ++  + +  +R+++ +
Sbjct: 145 ISSHMNQQQHEIDR---FVSLHMERVKYEIEEKRKRQARTIMEA 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,560,342
Number of Sequences: 28952
Number of extensions: 241578
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)