Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060682.seq
(632 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P14576-2 Cluster: Isoform 2 of P14576 ; n=2; Euarchonto... 66 7e-10
UniRef50_P61011 Cluster: Signal recognition particle 54 kDa prot... 66 7e-10
UniRef50_Q8C1Y6 Cluster: Colon RCB-0549 Cle-H3 cDNA, RIKEN full-... 64 2e-09
UniRef50_P49966 Cluster: Signal recognition particle 54 kDa prot... 44 0.002
UniRef50_Q8SS36 Cluster: SIGNAL RECOGNITION PARTICLE 54kDa SUBUN... 42 0.012
UniRef50_Q6BNS1 Cluster: Debaryomyces hansenii chromosome E of s... 38 0.20
UniRef50_Q7RB08 Cluster: Signal recognition particle protein SRP... 34 2.5
>UniRef50_P14576-2 Cluster: Isoform 2 of P14576 ; n=2;
Euarchontoglires|Rep: Isoform 2 of P14576 - Mus musculus
(Mouse)
Length = 103
Score = 66.1 bits (154), Expect = 7e-10
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +3
Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
LLEADVNI+LVK LRENV++ ID +EMA GLNKR+MIQ AV
Sbjct: 39 LLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAV 79
Score = 39.5 bits (88), Expect = 0.066
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 442 SLSRATIINEEVLNSMLKQIC 504
SLS ATIINEEVLN+MLK++C
Sbjct: 16 SLSNATIINEEVLNAMLKEVC 36
>UniRef50_P61011 Cluster: Signal recognition particle 54 kDa
protein; n=37; Eukaryota|Rep: Signal recognition
particle 54 kDa protein - Homo sapiens (Human)
Length = 504
Score = 66.1 bits (154), Expect = 7e-10
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +3
Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
LLEADVNI+LVK LRENV++ ID +EMA GLNKR+MIQ AV
Sbjct: 39 LLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAV 79
Score = 39.5 bits (88), Expect = 0.066
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 442 SLSRATIINEEVLNSMLKQIC 504
SLS ATIINEEVLN+MLK++C
Sbjct: 16 SLSNATIINEEVLNAMLKEVC 36
>UniRef50_Q8C1Y6 Cluster: Colon RCB-0549 Cle-H3 cDNA, RIKEN
full-length enriched library, clone:G430060P17
product:signal recognition particle 54 kDa, full insert
sequence; n=17; Eukaryota|Rep: Colon RCB-0549 Cle-H3
cDNA, RIKEN full-length enriched library,
clone:G430060P17 product:signal recognition particle 54
kDa, full insert sequence - Mus musculus (Mouse)
Length = 502
Score = 64.5 bits (150), Expect = 2e-09
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = +3
Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
LLEADVNI+LVK LRENV++ ID +EMA GLN+R+MIQ AV
Sbjct: 39 LLEADVNIKLVKQLRENVKSAIDLEEMASGLNQRKMIQHAV 79
Score = 39.5 bits (88), Expect = 0.066
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 442 SLSRATIINEEVLNSMLKQIC 504
SLS ATIINEEVLN+MLK++C
Sbjct: 16 SLSNATIINEEVLNAMLKEVC 36
>UniRef50_P49966 Cluster: Signal recognition particle 54 kDa protein
2; n=8; Magnoliophyta|Rep: Signal recognition particle
54 kDa protein 2 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 495
Score = 44.4 bits (100), Expect = 0.002
Identities = 16/41 (39%), Positives = 32/41 (78%)
Frame = +3
Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
LL++DV+ LVK ++ N++ +++ +++A G NKRR+I+ A+
Sbjct: 39 LLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAI 79
>UniRef50_Q8SS36 Cluster: SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: SIGNAL RECOGNITION
PARTICLE 54kDa SUBUNIT - Encephalitozoon cuniculi
Length = 466
Score = 41.9 bits (94), Expect = 0.012
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +3
Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
L+ ++VN R V +LR+ +RA +D +MA G NK RM+Q+AV
Sbjct: 37 LILSNVNPRYVSDLRDELRAKLDPGKMAPGFNKARMVQNAV 77
>UniRef50_Q6BNS1 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=4;
Saccharomycetales|Rep: Debaryomyces hansenii chromosome
E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 568
Score = 37.9 bits (84), Expect = 0.20
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +3
Query: 498 DMC*-LLEADVNIRLVKNLRENVRAVI--DFDEMAGGLNKRRMIQSAV 632
D+C LLE+DVNI+LV LR+N++A + ++ NKR+ +Q V
Sbjct: 31 DICNALLESDVNIKLVAKLRDNIKAKVKTQINDEESSTNKRKKLQKIV 78
>UniRef50_Q7RB08 Cluster: Signal recognition particle protein SRP54;
n=9; Aconoidasida|Rep: Signal recognition particle
protein SRP54 - Plasmodium yoelii yoelii
Length = 500
Score = 34.3 bits (75), Expect = 2.5
Identities = 14/41 (34%), Positives = 28/41 (68%)
Frame = +3
Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
L+ AD+N+ +K+++ N++ I+ + A G NK+R++Q V
Sbjct: 39 LILADINVIYLKDIKSNIKKNIEKNAAAYGNNKKRLVQKYV 79
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,482,687
Number of Sequences: 1657284
Number of extensions: 10983650
Number of successful extensions: 20918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20914
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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