Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060682.seq
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 45 1e-05
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.2
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 25 6.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 6.9
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 25 9.1
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 9.1
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 9.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 9.1
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.1
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
LLE DVN+RLV+ LR N++ I+ + G+N +R++Q AV
Sbjct: 39 LLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAV 79
Score = 30.3 bits (65), Expect = 0.24
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 427 NHCFASLSRATIINEEVLNSMLKQIC 504
N S+AT +NEE+++++LK IC
Sbjct: 11 NSALGDFSKATSVNEELVDTLLKNIC 36
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 567 REHFLLSFLQGGYLHLLPIISTYLLQHRI 481
R LLS + HL+P I+ +LL H+I
Sbjct: 136 RAKSLLSIKSHVHFHLIPFINFFLLYHQI 164
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 190 EK*TWNF-NFIAYRKAQIN*K 249
EK T+NF NF+ YR+ QIN K
Sbjct: 4270 EKLTFNFSNFVKYRQYQINLK 4290
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 385 NLNQNGFSRFRP*NNHCFASLSRATIINEEVLNSMLKQI 501
++N + +F + L + TII EE ++SMLK +
Sbjct: 194 DMNADAIKKFTETSPEMLTYLKKVTIIPEESVSSMLKVV 232
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 231 SSNKLKIYFCACLK*LLRCTKKTNMF 308
SSN K Y CL+ LL K N +
Sbjct: 1218 SSNSFKNYLLVCLRMLLEVAKNVNTY 1243
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 500 YVLIIGSRCKYPPCKKLKRKCSRCH 574
Y + S CK+P K L + CS H
Sbjct: 67 YAFLYCSNCKFPHIKGLCQICSNSH 91
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 310 ENILVFFVHLNNYFKQAQKYIFSLFEL 230
E++LV F+ +++Y K+ + + SLF L
Sbjct: 394 EDLLVPFIEVDDYLKREEHSLRSLFRL 420
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 376 IA*NLNQNGFSRFRP*NNHCFASLSRATIINEEVLNSM 489
I+ NLN + F+ P NH F++ S+++ +N+M
Sbjct: 183 ISKNLNTSSFNTRSPLRNHNFSNPSKSSKNGVHTINNM 220
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 494 FSIEFNTSSFIIVALLNDAKQWLFYGLN 411
FS+EF + S II + QWLFY L+
Sbjct: 141 FSVEFTSISLII-----KSSQWLFYTLS 163
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -1
Query: 452 LLNDAKQWLFYGLNLLKPFWFKF*AI---KRNYFCQ 354
+ NDA++ YG+ L K W + + + N+FC+
Sbjct: 633 IFNDARERDVYGVKLSKNMWISWAYVDNCEANFFCK 668
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,980
Number of Sequences: 5004
Number of extensions: 51270
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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