Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060682.seq
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57190| Best HMM Match : SRP54_N (HMM E-Value=1.1e-27)               66   2e-11
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.2  

>SB_57190| Best HMM Match : SRP54_N (HMM E-Value=1.1e-27)
          Length = 120

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +3

Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
           LLE+DVN++LVK LRENV+A IDF+EMA GLNKR+MIQ  V
Sbjct: 39  LLESDVNVQLVKRLRENVKAAIDFEEMAAGLNKRKMIQHTV 79



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 442 SLSRATIINEEVLNSMLKQICA 507
           SLS AT+INEEVLN+MLK++CA
Sbjct: 16  SLSNATVINEEVLNAMLKEVCA 37


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 614  PSLIKSTS---HFIKINDSANIFS*VFYKADI 528
            PSL  ST+   H I +ND+A +FS  FY+ +I
Sbjct: 5493 PSLSGSTTLRVHVIDLNDNAPVFSATFYETEI 5524


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 51   GNDQKKRSIWNLVRCNSHSE 110
            G DQ    IW L +CN HS+
Sbjct: 1020 GQDQGDFGIWTLSKCNQHSD 1039


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,956,940
Number of Sequences: 59808
Number of extensions: 340631
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)