Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060682.seq
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical p...    55   4e-08
Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical pr...    55   4e-08
U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical pr...    31   0.91 

>Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
           L+E+DV+IRLVK L++NV+  I+F+E+ GG NKRR IQ  V
Sbjct: 39  LIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRYIQKTV 79


>Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
           L+E+DV+IRLVK L++NV+  I+F+E+ GG NKRR IQ  V
Sbjct: 39  LIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRYIQKTV 79


>U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical
           protein K06A1.6 protein.
          Length = 937

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 424 NNHCFASLSRATIINEEVLNSMLKQI---CADYWKQ 522
           NNH  AS +R +I N ++ N  +KQ+    AD+W++
Sbjct: 144 NNHLSASAARFSISNPDLTNCQIKQMFPEMADHWRK 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,049
Number of Sequences: 27780
Number of extensions: 279472
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)