Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060682.seq
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.5  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 52  GTTRKKDLFGIWFDAIAIV 108
           G  RKK L  +W+D   IV
Sbjct: 60  GIHRKKVLLSVWWDYKGIV 78


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 141 ILDCHNKIHLFHYGYCI 91
           +LD  N+  L  +G+CI
Sbjct: 729 LLDIENRAKLTDFGFCI 745


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 141 ILDCHNKIHLFHYGYCI 91
           +LD  N+  L  +G+CI
Sbjct: 767 LLDIENRAKLTDFGFCI 783


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 52  GTTRKKDLFGIWFDAIAIV 108
           G  RKK L  +W+D   IV
Sbjct: 182 GIHRKKVLLSVWWDYKGIV 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,301
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)