Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060682.seq
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48900.1 68414.m05478 signal recognition particle 54 kDa prot...    45   5e-05
At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot...    44   6e-05
At3g18970.1 68416.m02408 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At1g14040.1 68414.m01660 EXS family protein / ERD1/XPR1/SYG1 fam...    28   5.9  
At5g15470.1 68418.m01811 glycosyl transferase family 8 protein c...    27   7.8  
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c...    27   7.8  

>At1g48900.1 68414.m05478 signal recognition particle 54 kDa protein
           3 / SRP54 (SRP-54C) identical to SP|P49967 Signal
           recognition particle 54 kDa protein 3 (SRP54)
           {Arabidopsis thaliana}
          Length = 495

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 16/41 (39%), Positives = 32/41 (78%)
 Frame = +3

Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
           LL++DV+  LVK ++ N++ +++ +++A G NKRR+I+ A+
Sbjct: 39  LLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAI 79


>At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein
           2 / SRP54 (SRP-54B) identical to SP|P49966 Signal
           recognition particle 54 kDa protein 2 (SRP54)
           {Arabidopsis thaliana}
          Length = 497

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 32/41 (78%)
 Frame = +3

Query: 510 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAV 632
           LL++DV+  LVK ++ N++ +++ +++A G NKRR+I+ A+
Sbjct: 39  LLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAI 79


>At3g18970.1 68416.m02408 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 472

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 387 VLGYQKEL-FLPAVDTFNLQIIIDIYKKTXXXXXXXXXXXXSKHKNIFSVYLSFAVG 220
           V GY ++L F P VD F    ++D+Y K              K KN+F+ + S A G
Sbjct: 242 VHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFT-WTSMATG 297


>At1g14040.1 68414.m01660 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 798

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 495 LQHRIQYLFIYNSSPAQRRKAVVILRPKSAK 403
           L  R++  FI + + A R KA+ ILRPK+ +
Sbjct: 375 LMERVEATFIKHFANANRAKAMNILRPKAKR 405


>At5g15470.1 68418.m01811 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 532

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 479 NTSSFIIVALLNDAKQWLFYGLNLLKPFWFKF 384
           N     ++     +K WL  G   L+PFW K+
Sbjct: 486 NVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKY 517


>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 533

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 479 NTSSFIIVALLNDAKQWLFYGLNLLKPFWFKF 384
           N     ++     +K WL  G   L+PFW K+
Sbjct: 487 NAKKAAVIHYNGQSKPWLEIGFEHLRPFWTKY 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,367
Number of Sequences: 28952
Number of extensions: 243888
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)