Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060681.seq
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 258 RCYDSTSSQNKFFPG 214
           + +DS S QN  FPG
Sbjct: 738 KSFDSRSRQNSSFPG 752


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 534  IAMSTNLSGSLCCTKQSQE 478
            I  ST L+  LCCTK+ +E
Sbjct: 1356 ILASTELN--LCCTKKKEE 1372


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 534  IAMSTNLSGSLCCTKQSQE 478
            I  ST L+  LCCTK+ +E
Sbjct: 1356 ILASTELN--LCCTKKKEE 1372


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 534  IAMSTNLSGSLCCTKQSQE 478
            I  ST L+  LCCTK+ +E
Sbjct: 1356 ILASTELN--LCCTKKKEE 1372


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 534  IAMSTNLSGSLCCTKQSQE 478
            I  ST L+  LCCTK+ +E
Sbjct: 1356 ILASTELN--LCCTKKKEE 1372


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 491 SNHRNVDI*SFSNGLMVLCRVQYNQETRFT 402
           S  RN++  SF   L++LC +       FT
Sbjct: 268 SKSRNIEGVSFGTNLVILCALWITTLLLFT 297


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 131 PRWVVAASILVTSSSLRASTSNPPDIV 51
           P+W  A   L  SSS + S    P IV
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIV 105


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 96  CHQNACCNHPSWGRKC*LPDG 158
           CH N  C     G +C  P G
Sbjct: 269 CHNNGTCLDKVGGFECKCPPG 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,837
Number of Sequences: 336
Number of extensions: 4096
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)