Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060681.seq
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   138   8e-34
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   134   1e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    29   0.42 
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   3.9  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   3.9  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.0  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   9.0  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  138 bits (333), Expect = 8e-34
 Identities = 69/102 (67%), Positives = 79/102 (77%)
 Frame = +3

Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431
           +IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 432 PAQDHQPITEASYVNIPVIALCNTDSH*DLWTLLSHATPSLP 557
           P  D Q I EAS+VNIPVIALC+TDS      +L+H   ++P
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDS------ILNHVDVAIP 165



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 26/51 (50%), Positives = 40/51 (78%)
 Frame = +1

Query: 73  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 225
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEK
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEK 60



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +2

Query: 512 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 625
           L  VD+AIP N K   SIGL W+LLAREVLRLRG + R
Sbjct: 157 LNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISR 194


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  134 bits (324), Expect = 1e-32
 Identities = 66/103 (64%), Positives = 79/103 (76%)
 Frame = +3

Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431
           +IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V D
Sbjct: 69  TIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTD 128

Query: 432 PAQDHQPITEASYVNIPVIALCNTDSH*DLWTLLSHATPSLPT 560
           P  D Q I EAS+VNIPVIALC+TDS      +L+H   ++PT
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 25/55 (45%), Positives = 42/55 (76%)
 Frame = +1

Query: 61  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 225
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEK
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEK 59



 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 26/38 (68%), Positives = 29/38 (76%)
 Frame = +2

Query: 512 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 625
           L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R
Sbjct: 156 LNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSR 193


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 408 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 509
           P L+++L+P ++     EA   ++P I + +TD+
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 476 HSCDCFVQHRLPLRFVDIAIPCNT 547
           HS D + Q+ +P R +++A  C T
Sbjct: 176 HSKDDYAQYMIPFRDINVATSCRT 199


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 458 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP 291
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -1

Query: 204 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 55
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 164  MSTNDVLMVPM*STCVVPGKNLFWLLVL 247
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 409 GSRNAAWIWLVKAPGVKRPAIGVAPVCAA 323
           G+ +A W WL+   G    A+ VA + +A
Sbjct: 92  GAPSAVWCWLIAGAGCMCIALSVAELVSA 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,998
Number of Sequences: 5004
Number of extensions: 62409
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)