Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060681.seq
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 125 3e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 125 3e-29
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 32 0.43
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.0
09_06_0103 + 20873310-20873382,20873530-20873735 29 4.0
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532 28 7.0
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 9.2
05_01_0127 - 863755-865182 27 9.2
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 125 bits (301), Expect = 3e-29
Identities = 57/86 (66%), Positives = 68/86 (79%)
Frame = +3
Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431
+IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ D
Sbjct: 71 AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD 130
Query: 432 PAQDHQPITEASYVNIPVIALCNTDS 509
P DHQPI E++ NIP IA C+TDS
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDS 156
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +1
Query: 76 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 225
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEK 61
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/39 (58%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG-VLP 622
P+R+VDI IP N K SIG ++WLLAR VL++RG +LP
Sbjct: 157 PMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILP 195
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 125 bits (301), Expect = 3e-29
Identities = 57/86 (66%), Positives = 68/86 (79%)
Frame = +3
Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431
+IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ D
Sbjct: 71 AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD 130
Query: 432 PAQDHQPITEASYVNIPVIALCNTDS 509
P DHQPI E++ NIP IA C+TDS
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDS 156
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/61 (54%), Positives = 43/61 (70%)
Frame = +1
Query: 43 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 222
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 223 K 225
K
Sbjct: 61 K 61
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/39 (58%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG-VLP 622
P+R+VDI IP N K +SIG ++WLLAR VL++RG +LP
Sbjct: 157 PMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILP 195
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 31.9 bits (69), Expect = 0.43
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 219 GKTCSGCSCCRSIENPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 395
G+ SGC CR E+ D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 396 AFREPRLLIVLD 431
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 143 TFSAPRWVVAASILVTSSSLRASTSNP 63
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 320 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 427
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
Length = 119
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 312 QHADRRAVMR*RTHQ-RGSRCYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGL 157
+HA V R R G R + ++++ + P TT +GTIS+ VD+GL
Sbjct: 56 RHASEWMVHRARQRVGEGVRLDNGLANRDWYLPSTTHA--VGTISSGVVDVGL 106
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 140 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 27
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>05_01_0127 - 863755-865182
Length = 475
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 418 KRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFSTAR*P 299
KRR +A ++ + PG RP G P AA+ A P
Sbjct: 209 KRRNGEHACEVYTLGKPGGWRPCAGRVPASAASILPAMPP 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,907,099
Number of Sequences: 37544
Number of extensions: 463929
Number of successful extensions: 1136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -