Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060681.seq
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 160 7e-40
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 1.8
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 3.1
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 3.1
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73) 27 9.4
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 27 9.4
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0) 27 9.4
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 160 bits (389), Expect = 7e-40
Identities = 73/86 (84%), Positives = 80/86 (93%)
Frame = +3
Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431
+IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV D
Sbjct: 67 TIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCD 126
Query: 432 PAQDHQPITEASYVNIPVIALCNTDS 509
P DHQP+TEASYVNIPVIA CNTDS
Sbjct: 127 PRIDHQPVTEASYVNIPVIAFCNTDS 152
Score = 89.4 bits (212), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +1
Query: 55 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 225
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEK
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEK 57
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +2
Query: 509 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 625
PLR VD+AIPCN K HSIGLM+WLLAREVLR+RG + R
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISR 191
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 500 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 336
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 557 HSIGLMWWLLAREVLRLRGVLP 622
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 500 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 342
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 500 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 342
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
Length = 139
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 165 CLQTTC*WYPCD-QLASYLGKTCSGCSC 245
C+Q C CD + SY G+TC G +C
Sbjct: 87 CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 281 HLITALRSACCTEVCRAHRCYAYCGTF 361
+ + + R + T++ R HRC YC F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575
>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 483
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 424 TIKRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFS 314
T+++RG ++A + W +RP+ VC+ N S
Sbjct: 122 TMEKRGRKSATYFWPSSTSYERRPSFFADHVCSVNCS 158
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 615 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGS 505
T +SLN S N + P EW + V+ G+ LSGS
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGS 899
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,824,803
Number of Sequences: 59808
Number of extensions: 527144
Number of successful extensions: 1269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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