BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060681.seq (627 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 126 1e-29 At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 123 8e-29 At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 123 8e-29 At2g22340.1 68415.m02651 hypothetical protein 33 0.21 At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.4 At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 29 3.3 At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 28 5.8 >At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI:16379 Length = 298 Score = 126 bits (304), Expect = 1e-29 Identities = 57/86 (66%), Positives = 68/86 (79%) Frame = +3 Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431 +IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ D Sbjct: 71 AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130 Query: 432 PAQDHQPITEASYVNIPVIALCNTDS 509 P DHQPI E + NIP+IA C+TDS Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDS 156 Score = 65.3 bits (152), Expect = 3e-11 Identities = 28/50 (56%), Positives = 35/50 (70%) Frame = +1 Query: 76 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 225 L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEK Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEK 61 Score = 56.4 bits (130), Expect = 1e-08 Identities = 23/37 (62%), Positives = 29/37 (78%) Frame = +2 Query: 509 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 619 P+RFVDI IP N K HSIG ++WLLAR VL++RG + Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193 >At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 280 Score = 123 bits (297), Expect = 8e-29 Identities = 56/86 (65%), Positives = 66/86 (76%) Frame = +3 Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431 +IENP D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ D Sbjct: 72 AIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTD 131 Query: 432 PAQDHQPITEASYVNIPVIALCNTDS 509 P DHQPI E + NIP IA C+TDS Sbjct: 132 PRTDHQPIKEGALGNIPTIAFCDTDS 157 Score = 64.9 bits (151), Expect = 4e-11 Identities = 26/46 (56%), Positives = 35/46 (76%) Frame = +1 Query: 88 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 225 E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62 Score = 53.6 bits (123), Expect = 1e-07 Identities = 22/37 (59%), Positives = 28/37 (75%) Frame = +2 Query: 509 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 619 P+ FVDI IP N K HSIG ++WLLAR VL++RG + Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194 >At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 332 Score = 123 bits (297), Expect = 8e-29 Identities = 56/86 (65%), Positives = 66/86 (76%) Frame = +3 Query: 252 SIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 431 +IENP D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ D Sbjct: 72 AIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTD 131 Query: 432 PAQDHQPITEASYVNIPVIALCNTDS 509 P DHQPI E + NIP IA C+TDS Sbjct: 132 PRTDHQPIKEGALGNIPTIAFCDTDS 157 Score = 64.9 bits (151), Expect = 4e-11 Identities = 26/46 (56%), Positives = 35/46 (76%) Frame = +1 Query: 88 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 225 E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62 Score = 53.6 bits (123), Expect = 1e-07 Identities = 22/37 (59%), Positives = 28/37 (75%) Frame = +2 Query: 509 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 619 P+ FVDI IP N K HSIG ++WLLAR VL++RG + Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194 >At2g22340.1 68415.m02651 hypothetical protein Length = 358 Score = 32.7 bits (71), Expect = 0.21 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 126 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 245 SW LP+GD +Q C WY + S +G+ + C Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227 >At2g07020.1 68415.m00803 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 700 Score = 29.9 bits (64), Expect = 1.4 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 363 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 464 TP TNQ++ A E +LDP PI EA Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653 >At3g54570.1 68416.m06038 calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] Length = 417 Score = 28.7 bits (61), Expect = 3.3 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -3 Query: 562 RVGRLGVAWDSNVHKS*WESVL 497 R GR+G WD+NVH++ S+L Sbjct: 107 RSGRIGRCWDANVHRATCSSLL 128 >At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat family protein contains 7 WD-40 repeats; similar to PC326 protein (GI:200241) (PIR2:S37694) [Mus musculus];Human (H326) translated mRNA - Homo sapiens, EMBL:HS06631 Length = 481 Score = 27.9 bits (59), Expect = 5.8 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 465 SYVNIPVIALCNTDSH*DLWTLLSHATPSLP 557 S+ +IP++A C + LWT +S+ SLP Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,451,418 Number of Sequences: 28952 Number of extensions: 350669 Number of successful extensions: 807 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 779 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 807 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1275599520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -