Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060680.seq
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.9  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   8.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.5  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 20  YITTFCAGSVIFGINFRIVIVFAXXALSK*QMRKCC 127
           Y  T C GS I G  F ++         K + RK C
Sbjct: 3   YQLTACVGSAIAGFLFLLICDSYLKIYHKEKYRKFC 38


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 236 CVNTFFIMPVQQISVKNSSEIESW 307
           C+ TF ++PV  ++ +  +   SW
Sbjct: 203 CLTTFGLLPVNGVTSEKCNLTFSW 226


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 616 SPFNTGHLQQTPLI 575
           SP N GHL Q  +I
Sbjct: 226 SPMNMGHLTQQQII 239


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 624 HRRLRSTPDISSKRHSLNGFDFS 556
           H RLRS PD   +   L   D S
Sbjct: 329 HNRLRSLPDNLFRETGLERLDVS 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,334
Number of Sequences: 336
Number of extensions: 2910
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)