Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060680.seq
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    65   7e-12
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    30   0.32 
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   5.2  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   6.8  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.0  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +2

Query: 389 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
           +ICR+C CE  P +PL  PC C+GS++YVHQ CL +WL
Sbjct: 6   EICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWL 43


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 185 HFSFQVNRKCILTYCNFCVNTFFIMPVQQI 274
           HFSF +    I +YCNF +  FF+     I
Sbjct: 320 HFSFGIVVLAIFSYCNFGIKQFFLFAAVMI 349


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 566 LILVCMMKLNLHSSQDXVSVPSTTAASNSGVRI*GFLNN 450
           L ++C++K   H+    + + S TA SNS  +    LN+
Sbjct: 185 LWILCLIKETQHNEMGNIKLSSQTAKSNSSTQTKTCLND 223


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 206 RKCILTYCNFCVNTFFIMPVQQISVKNSSEI 298
           R C   +C  C N+F  +PV  +SV  + ++
Sbjct: 50  RWCGKLFCYNCCNSFAKLPVSSVSVDPTEDL 80


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 470 YVHQSCLQQWLT 505
           + HQ+C+ QWLT
Sbjct: 788 FFHQACIDQWLT 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,801
Number of Sequences: 5004
Number of extensions: 46028
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)