Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060680.seq
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858... 60 2e-09
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 52 4e-07
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842... 49 4e-06
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916... 48 6e-06
05_07_0040 + 27243195-27243428,27243665-27243736,27243837-272439... 48 8e-06
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 47 1e-05
01_05_0670 - 24159922-24160014,24160127-24160410,24160856-241609... 47 1e-05
01_06_1646 - 38887178-38887271,38888230-38888270,38888744-388888... 44 1e-04
05_03_0659 - 16715437-16715520,16715607-16715714,16715788-167158... 43 2e-04
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380... 42 3e-04
01_02_0112 - 11230202-11230282,11230362-11230469,11230588-112306... 40 0.002
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 38 0.005
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 37 0.011
11_06_0305 + 22209640-22209736,22212679-22212941,22213444-222135... 31 0.043
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 35 0.046
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 35 0.061
05_05_0064 + 22063951-22064462,22066344-22066566 33 0.19
09_04_0102 + 14618475-14618729,14620446-14620510,14620624-146207... 31 0.57
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 30 1.7
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 28 5.3
01_06_0302 - 28318910-28318999,28319118-28319210,28319303-283193... 28 5.3
12_01_0417 - 3296066-3296356,3296491-3296541,3296657-3296862,329... 28 7.0
08_02_1103 - 24329120-24329623 27 9.3
>06_03_0875 -
25584789-25585307,25585424-25585570,25585734-25585897,
25586015-25586172,25586536-25586904,25586998-25587209,
25587439-25588059,25588561-25588699,25588968-25589044,
25589120-25589800,25590641-25590889
Length = 1111
Score = 59.7 bits (138), Expect = 2e-09
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +2
Query: 389 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
D+CRIC + ++PL PC CSGS+K+VHQ CL QWL
Sbjct: 37 DVCRICRNPGDDEHPLRYPCACSGSIKFVHQDCLLQWL 74
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTAPRXDLVSYA-NLTSSCTL 559
CRIC +E PL PC C GS+++VH CL +WL R L S+C L
Sbjct: 30 CRICRVPAEAGRPLRHPCACRGSIRFVHDDCLLRWLATRRTSHCEVCKRLISTCPL 85
>02_04_0346 -
22183145-22183264,22183877-22183966,22184140-22184220,
22184430-22184589,22184723-22184787,22185370-22185441,
22186163-22186327
Length = 250
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRIC E +N L +PC CSGSLKY H+ C+Q+W
Sbjct: 32 CRICQEEDLAKN-LESPCACSGSLKYAHRECVQRW 65
>08_02_0785 +
21190002-21190253,21190452-21190523,21191498-21191631,
21191700-21191850,21191938-21192087
Length = 252
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRIC E N L +PC C+GSLKY H++C+Q+W
Sbjct: 61 CRICQEEDNISN-LESPCACTGSLKYAHRACVQRW 94
>05_07_0040 +
27243195-27243428,27243665-27243736,27243837-27243904,
27243987-27244113,27244514-27244669
Length = 218
Score = 47.6 bits (108), Expect = 8e-06
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRIC E + Q + PC C GSLKY H+ C+Q+W
Sbjct: 55 CRICQ-EEDDQTYMETPCSCRGSLKYAHRKCIQRW 88
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRIC ++E + L+APC+C G+ KYVH+SCL W
Sbjct: 183 CRIC-LDNEGDD-LIAPCHCKGTQKYVHRSCLDNW 215
>01_05_0670 -
24159922-24160014,24160127-24160410,24160856-24160979,
24161174-24161320,24161752-24161837,24162039-24162234
Length = 309
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 395 CRIC-HCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRIC E+EP + L++PC C G+ ++VH+ CL W
Sbjct: 55 CRICLESETEPGDELISPCMCKGTQQFVHRYCLDHW 90
>01_06_1646 -
38887178-38887271,38888230-38888270,38888744-38888827,
38888933-38889080,38889232-38889299,38889563-38889634,
38890479-38890673
Length = 233
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRIC E + + + +PC C+G+LK+ H+ C+Q+W
Sbjct: 42 CRICQEEGD-EGAMDSPCACTGTLKFAHRKCIQRW 75
>05_03_0659 -
16715437-16715520,16715607-16715714,16715788-16715871,
16715963-16716095,16717051-16717118,16717528-16717599,
16717771-16717843,16718038-16718057
Length = 213
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 401 ICHCESEPQNPLL-APCYCSGSLKYVHQSCLQQW 499
ICH E + + +PC CSGSLKY H+ C+Q+W
Sbjct: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRW 41
>11_06_0334 +
22437187-22437322,22437430-22437515,22437927-22438073,
22438166-22438274,22439510-22439633,22439727-22439752,
22439774-22440000,22440084-22440185
Length = 318
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRIC E++ ++ +APC C G+ KYVH+ CL W
Sbjct: 38 CRIC-LETDGRD-FIAPCKCKGTSKYVHRDCLDHW 70
>01_02_0112 -
11230202-11230282,11230362-11230469,11230588-11230671,
11230791-11230920,11231864-11231931,11232412-11232483,
11232670-11232705
Length = 192
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 440 APCYCSGSLKYVHQSCLQQW 499
+PC CSGSLKY H+ C+Q+W
Sbjct: 3 SPCGCSGSLKYAHRGCVQRW 22
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 392 ICRICHCE-SEPQNPLLAPCYCSGSLKYVHQSCLQQWLT 505
+CRIC E SE + L C C G L H+ C +W T
Sbjct: 214 VCRICMVELSEGSDTLKLECSCKGELALAHKHCAMKWFT 252
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 434 LLAPCYCSGSLKYVHQSCLQQWLTAPRXDLVSYANLTSS---CTLKSXPFNEWRLLE 595
L++PC C G+ ++VH+SCL W + S+ + +++ N WR ++
Sbjct: 92 LISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETWEDNSWRKMK 148
>11_06_0305 +
22209640-22209736,22212679-22212941,22213444-22213530,
22214866-22214937,22215729-22215793,22215918-22216050,
22216397-22216477,22216599-22216688,22217954-22218103
Length = 345
Score = 31.1 bits (67), Expect(2) = 0.043
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLK 469
CRIC E +N L PC CSGSLK
Sbjct: 97 CRICQEEDSIKN-LEKPCACSGSLK 120
Score = 23.0 bits (47), Expect(2) = 0.043
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +2
Query: 464 LKYVHQSCLQQW 499
L Y H++C+Q+W
Sbjct: 148 LPYAHRACVQRW 159
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 392 ICRICHCE-SEPQNPLLAPCYCSGSLKYVHQSCLQQWLT 505
+CRIC E +E L C C G L HQ C +W +
Sbjct: 250 VCRICLVELNEGGETLKMECSCKGELALAHQDCAVKWFS 288
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 392 ICRICHCE-SEPQNPLLAPCYCSGSLKYVHQSCLQQWLT 505
+CRIC E +E L C C G L HQ C +W +
Sbjct: 242 VCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFS 280
>05_05_0064 + 22063951-22064462,22066344-22066566
Length = 244
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Frame = +2
Query: 395 CRICH-----CESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
CRICH +E + C C G L Y H+ C + W
Sbjct: 125 CRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETW 164
>09_04_0102 +
14618475-14618729,14620446-14620510,14620624-14620774,
14620894-14620971,14621065-14621154,14621547-14621669
Length = 253
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLK-YVH 478
CRIC E +N L +PC C+GSLK Y H
Sbjct: 62 CRICQEEDSIKN-LESPCACTGSLKPYEH 89
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 410 CESEPQNPLL-APCYCSGSLKYVHQSCLQQW 499
C+ + + PL+ C C G L H++C+ W
Sbjct: 27 CQQKTEEPLVDLGCRCRGDLSKAHRTCISVW 57
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCL 490
+C+IC+ E E LL +CSG ++VH CL
Sbjct: 641 MCQICNTEEE--KTLLL--HCSGCSRHVHPGCL 669
>01_06_0302 -
28318910-28318999,28319118-28319210,28319303-28319383,
28319483-28319633,28319716-28319783,28319989-28320143,
28320268-28320326,28320649-28320899
Length = 315
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 395 CRICHCESEPQNPLLAPCYCSGSLK 469
CRIC E + ++ + PC C GSLK
Sbjct: 59 CRICQEEGD-ESYMETPCCCKGSLK 82
>12_01_0417 -
3296066-3296356,3296491-3296541,3296657-3296862,
3296944-3297237,3297335-3297533,3297620-3297679,
3297786-3297975,3298112-3298245,3298339-3298602,
3299158-3299344,3299476-3299540,3299622-3299776,
3300650-3300735,3301240-3301478
Length = 806
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -1
Query: 624 HRRLRSTPDISSKRHSL 574
HR LRST D SS RHSL
Sbjct: 412 HRYLRSTDDESSHRHSL 428
>08_02_1103 - 24329120-24329623
Length = 167
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 395 CRICHCESEPQNPL-LAPCYCSGSLKYVHQSCLQQWL 502
CR+C EP++ + PC G L H++CL++WL
Sbjct: 100 CRVCLARFEPESVVNRLPC---GHL--FHRACLEKWL 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,099,896
Number of Sequences: 37544
Number of extensions: 285895
Number of successful extensions: 789
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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