Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060680.seq
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   3e-21
SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)               57   1e-08
SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14)              56   3e-08
SB_11781| Best HMM Match : zf-C3HC4 (HMM E-Value=6.6e-16)              51   7e-07
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)               51   7e-07
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              50   2e-06
SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18)              49   4e-06
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              46   3e-05
SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_40245| Best HMM Match : GRIP (HMM E-Value=9.1)                      31   0.58 
SB_47645| Best HMM Match : Pox_H7 (HMM E-Value=4.7)                    29   3.1  
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)         28   7.2  
SB_49846| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3)           28   7.2  
SB_36946| Best HMM Match : ResIII (HMM E-Value=0.47)                   28   7.2  
SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_45090| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)               27   9.5  

>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 38/80 (47%), Positives = 54/80 (67%)
 Frame = +2

Query: 389 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTAPRXDLVSYANLTSSCTLKSX 568
           +ICRICHCE+EP  PL++PC+CSGSL+YVHQ+CLQ+W+ +         N       K  
Sbjct: 668 EICRICHCEAEPDQPLISPCHCSGSLQYVHQTCLQRWIKSSDTKKCELCNYEFIMEAKMK 727

Query: 569 PFNEWRLLEMSGVERRRLCC 628
           PF +W+ L+M+  ERR++ C
Sbjct: 728 PFRKWQALDMTRSERRKIMC 747


>SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)
          Length = 389

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/66 (36%), Positives = 34/66 (51%)
 Frame = +2

Query: 389 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTAPRXDLVSYANLTSSCTLKSX 568
           D CRICHC  E +  L++PC C G++++VH SCL  WL               +   K+ 
Sbjct: 166 DACRICHCGGESE-VLISPCLCMGTVRFVHHSCLMDWLQRCVKTKCELCLYPVAVRRKTK 224

Query: 569 PFNEWR 586
           P  +WR
Sbjct: 225 PLKKWR 230


>SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14)
          Length = 390

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/68 (38%), Positives = 33/68 (48%)
 Frame = +2

Query: 389 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTAPRXDLVSYANLTSSCTLKSX 568
           +ICRICH   E   PL+ PC+CSGS K+VH +CL  W      +         +   K  
Sbjct: 200 NICRICHSAGE--EPLVTPCHCSGSAKFVHATCLLTWFKKAVKNTCELCRCKVAIKKKGK 257

Query: 569 PFNEWRLL 592
           PF E   L
Sbjct: 258 PFAEGHTL 265


>SB_11781| Best HMM Match : zf-C3HC4 (HMM E-Value=6.6e-16)
          Length = 293

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = +2

Query: 395 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTAPR 514
           CRICH E +    L++PC CSGS K+VH+SCL  W    R
Sbjct: 88  CRICHTEGD--EVLISPCKCSGSTKWVHESCLVLWFQVSR 125


>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
          Length = 270

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/36 (61%), Positives = 23/36 (63%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQW 499
           ICRICH        L+APC C GS KYVHQSCL  W
Sbjct: 154 ICRICH-GGPTTEMLIAPCRCCGSAKYVHQSCLLMW 188


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/76 (32%), Positives = 36/76 (47%)
 Frame = +2

Query: 389 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTAPRXDLVSYANLTSSCTLKSX 568
           D CRIC  +S     +++PC+CSG+L  VH  CL++WL+A   +                
Sbjct: 105 DSCRICR-DSTAGCDVISPCHCSGTLGRVHVRCLEEWLSASNKNECEICKYEYHLQRTPK 163

Query: 569 PFNEWRLLEMSGVERR 616
            F +W     S  ERR
Sbjct: 164 TFRQWLKNPRSRTERR 179


>SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18)
          Length = 391

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLT 505
           +CRICH   E + PL+  C C+G++KY HQ+C+  W++
Sbjct: 175 MCRICHGGDEDE-PLMVTCRCTGTVKYAHQNCVLNWIS 211


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +2

Query: 392 ICRICHCESEP---QNPLLAPCYCSGSLKYVHQSCLQQWLT 505
           +CRIC    +    +  L+ PC C+G+L Y H+SC++QWLT
Sbjct: 63  MCRICQNTVQRMIGKEELIKPCLCNGTLGYAHRSCMEQWLT 103


>SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 395 CRICHC--ESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
           C +C    E EP    + PC C G+ K+VHQSCLQ+W+
Sbjct: 25  CWVCFATDEDEPSVAWVKPCLCRGTTKWVHQSCLQRWI 62


>SB_40245| Best HMM Match : GRIP (HMM E-Value=9.1)
          Length = 142

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 405 AIVRVNHRTH--CWPHVIVQEALNTYTRVAC 491
           A+V VNH+     W H+++ +A  +YTRV C
Sbjct: 75  ALVEVNHKGDGFLWRHLLLAQATQSYTRVMC 105


>SB_47645| Best HMM Match : Pox_H7 (HMM E-Value=4.7)
          Length = 220

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +S+K++N L+
Sbjct: 66  QYPKDAPHLFIQNAKVNDFSYKAHNALQ 93


>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
          Length = 966

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +++K++N L+
Sbjct: 491 QYPKDAPHLFIQNAKVNDFNYKAHNALQ 518


>SB_49846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +++K++N L+
Sbjct: 66  QYPKDAPHLFIQNAKVNDFNYKAHNALQ 93


>SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +++K++N L+
Sbjct: 249 QYPKDAPHLFIQNAKVNDFNYKAHNALQ 276


>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299  QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
            Q+P ++ HLF++ A    +++K++N L+
Sbjct: 1356 QYPKDAPHLFIQNAKVNDFNYKAHNALQ 1383


>SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +++K++N L+
Sbjct: 66  QYPKDAPHLFIQNAKVNDFNYKAHNALQ 93


>SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3)
          Length = 368

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +++K++N L+
Sbjct: 67  QYPKDAPHLFIQNAKVNDFNYKAHNALQ 94


>SB_36946| Best HMM Match : ResIII (HMM E-Value=0.47)
          Length = 979

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299  QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
            Q+P ++ HLF++ A    +++K++N L+
Sbjct: 951  QYPKDAPHLFIQNAKVNDFNYKAHNALQ 978


>SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 814

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +++K++N L+
Sbjct: 66  QYPKDAPHLFIQNAKVNDFNYKAHNALQ 93


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 433 IVGPMLLFRKP*IRTPELLAAVVDGTETXSCELCKFNFIMHTKIK 567
           I+  + + + P  RTP L+   V+ T+  + + C    IMH  +K
Sbjct: 444 IIDLLDVVKDPVSRTPALIFEYVNNTDFKALDFCHSRGIMHRDVK 488


>SB_45090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 299 QFPMNSSHLFVERAL*KKYSHKSYNKLK 216
           Q+P ++ HLF++ A    +++K++N L+
Sbjct: 40  QYPKDAPHLFIQNAKVNYFNYKAHNALQ 67


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 298  NFR*ILHTYLLNGHYEKSIHTKVTI 224
            +FR ILHT L N HY+  +  + T+
Sbjct: 3959 DFRMILHTKLANPHYKPEMQAQTTL 3983


>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
          Length = 662

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPC---YCSGSLK 469
           IC IC   S   NP L PC   +C G L+
Sbjct: 21  ICGICRKSSATSNPKLLPCLHSFCFGCLE 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,838,930
Number of Sequences: 59808
Number of extensions: 347093
Number of successful extensions: 718
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)