Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060680.seq
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    60   2e-09
AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z36948-1|CAA85409.1|  180|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    48   6e-06
Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    38   0.006
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    38   0.006
Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical pr...    37   0.014
AF039045-12|ABJ99097.1|  272|Caenorhabditis elegans Serpentine r...    30   1.2  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine re...    27   8.4  
AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
 Frame = +2

Query: 392 ICRICHCESEPQN--PLLAPCYCSGSLKYVHQSCLQQWL 502
           +CRICHC   P +  PL++PC CSGSL+YVH SCL  WL
Sbjct: 193 LCRICHCCWPPDSNDPLISPCRCSGSLQYVHVSCLMHWL 231


>AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical
           protein C53D5.2 protein.
          Length = 254

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 19/39 (48%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = +2

Query: 389 DICRICHCESEPQ-NPLLAPCYCSGSLKYVHQSCLQQWL 502
           ++CRICH  +  + NPL++PC CSG+L +VH++C+ +WL
Sbjct: 15  NMCRICHTSTSTRSNPLISPCRCSGTLLFVHKACVVRWL 53


>Z36948-1|CAA85409.1|  180|Caenorhabditis elegans Hypothetical
           protein D2089.2 protein.
          Length = 180

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
           ICRIC       + L+ PC CSG++ YVH  CL+QW+
Sbjct: 24  ICRICFDNDTSSDSLIKPCSCSGTVAYVHNGCLEQWV 60


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTAPRXDLVSYAN 538
           +CR+C      +  L  PC C+GS+KYVHQ CL +WL   + ++    N
Sbjct: 52  MCRVCRGN---EGSLYYPCLCTGSIKYVHQECLVEWLKYSKKEVCELCN 97


>Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical
           protein C17E4.3 protein.
          Length = 431

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
 Frame = +2

Query: 392 ICRICHCES--------EPQNPLLAPCYCSGSLKYVHQSCLQQWLT 505
           +CRIC C          +   PL++PC CSG++   H+SCL+ WLT
Sbjct: 12  VCRICMCGETSIPYLGQQAGEPLISPCKCSGTMGLFHRSCLEHWLT 57


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
           ICRIC      +  ++ PC C+G++  VH+ CL +W+
Sbjct: 51  ICRICQMH---EGDMVRPCDCAGTMGDVHEECLTKWV 84


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
           ICRIC      +  ++ PC C+G++  VH+ CL +W+
Sbjct: 51  ICRICQMH---EGDMVRPCDCAGTMGDVHEECLTKWV 84


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 392 ICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
           ICRIC      +  ++ PC C+G++  VH+ CL +W+
Sbjct: 97  ICRICQMH---EGDMVRPCDCAGTMGDVHEECLTKWV 130


>Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical
           protein M110.3 protein.
          Length = 189

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 395 CRICH-CESEPQNPLLAPCYCSGSLKYVHQSCLQQWLT 505
           C+ C   ES+     + PC C GS+ +VH  CL  W +
Sbjct: 16  CKFCFGTESDNALSFVHPCRCRGSIHWVHHQCLAMWFS 53


>AF039045-12|ABJ99097.1|  272|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 15 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 194 FQVNRKCILTYCNFCVNTFFIMPVQQISVKNSSEIE 301
           F++NR  ++   N C++ FF   V+Q+SV    E++
Sbjct: 205 FKINRLALIDVANVCLSDFFPFIVKQLSVLKIFELQ 240


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 320  HRPIPNFQFPMNSSHLFVERAL*KKYSH 237
            HRP+P  + P N   +++ERA   KY H
Sbjct: 1152 HRPVPR-KLPTNIERMYIERAHMVKYKH 1178


>AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine
           receptor, class x protein112 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 461 SLKYVHQSCLQQWLTAPRXDLVSYANLTSSCTLKS 565
           S+K+  QSC+Q W++A   D  + A  T  C  +S
Sbjct: 217 SIKFFFQSCIQDWISA--VDAANNAASTKYCENQS 249


>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 389 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWL 502
           D+C IC  E + +   + PC       Y H  CL++WL
Sbjct: 602 DVCAICFIEMK-EEARITPCK-----HYFHGPCLRKWL 633


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,036
Number of Sequences: 27780
Number of extensions: 267608
Number of successful extensions: 636
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)