Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060680.seq
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.80 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 455 NNNMGPTMGSVVHSHN 408
           N+ MGPTMG   H H+
Sbjct: 340 NHTMGPTMGPPHHHHH 355


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 235  KVTIS*NTFSIYLKTKVAFVLNMNIAA*XSRNHPSRATF 119
            K+T +  T    +    AF++N N+    S+N   R  F
Sbjct: 944  KLTKTSGTVQAQINPDFAFIVNSNLRLTFSKNVQGRVGF 982


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 535 KFNFIMHTKIKXVQ*VAFAGDVR 603
           ++  +M TK+K ++ + F  DVR
Sbjct: 40  EYPLVMDTKLKIIEILQFILDVR 62


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 386 RWSCCMMFDCSQTQSVQFLYHNHRPIPNFQFP 291
           R++C  +  C++   V+   + H PIP   FP
Sbjct: 244 RYNCERL--CNRLGRVKRFINWHEPIPEAYFP 273


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 535 KFNFIMHTKIKXVQ*VAFAGDVR 603
           ++  +M TK+K ++ + F  DVR
Sbjct: 8   EYPLVMDTKLKIIEILQFILDVR 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,364
Number of Sequences: 438
Number of extensions: 3146
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)