Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060679.seq
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001509F11 Cluster: DHHC zinc finger domain containi...    36   0.82 
UniRef50_A7P0I6 Cluster: Chromosome chr19 scaffold_4, whole geno...    36   1.1  
UniRef50_Q4PIW2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_A0EC29 Cluster: Chromosome undetermined scaffold_89, wh...    35   1.4  
UniRef50_Q5CRG1 Cluster: Putative uncharacterized protein; n=2; ...    33   7.6  

>UniRef50_UPI0001509F11 Cluster: DHHC zinc finger domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep: DHHC
           zinc finger domain containing protein - Tetrahymena
           thermophila SB210
          Length = 555

 Score = 35.9 bits (79), Expect = 0.82
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 385 LKKRVSNQTNVFPSAQSLQLTNKRH-HVCAVVVSIHRHHNEWLQNIICKTKLMYCYCECL 209
           L K+VS+ + +    Q +Q    +H  +C   V ++ HH  W+ N +      Y Y   L
Sbjct: 341 LLKQVSDPSQICAKCQIIQPKRSKHCDICNKCVKVYDHHCPWINNCVGSNNYKYFYLFVL 400

Query: 208 LFHIILKF 185
              I L F
Sbjct: 401 SIFIQLIF 408


>UniRef50_A7P0I6 Cluster: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr19 scaffold_4, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 211

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 25/77 (32%), Positives = 38/77 (49%)
 Frame = +2

Query: 158 VNTNK*SLRKFKNDVEQ*ALTITIH*FCFTDNVL*PFIVMPVDADYNRTDVVSLVCELKG 337
           +N  K  +   K+   Q A T+ +  F   D++L P I  P DA  NRT   +   +++ 
Sbjct: 77  MNRRKDMVANLKSKANQMASTLNMSNFANRDSLLGPEI-KPADA-MNRTTAANYERQMRD 134

Query: 338 LRTWKDICLVRNSLFQQ 388
           LR WK   +V+N L  Q
Sbjct: 135 LRNWKRQYIVQNILHWQ 151


>UniRef50_Q4PIW2 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 406

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 382 KKRVSN-QTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQNIICKTKLMYC 224
           K  +SN +T +  ++Q+L  T    HV   V+ ++ +HN WLQNI  +T+   C
Sbjct: 71  KLEISNDETVILHTSQTLFETPVHSHVDTNVLRVY-YHNSWLQNITSETRATNC 123


>UniRef50_A0EC29 Cluster: Chromosome undetermined scaffold_89, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_89,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 428

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 635 CSTIIHFNNKFQTLH*CLTSDC-TKSTLILHSFSFPVLRGDHDGTNLLSNVGQVTSGLCS 459
           CS  IH     Q +  CLT DC +K TL    F+      +HD ++++  +  +TS L  
Sbjct: 13  CSNEIHKKQNMQIIALCLTDDCNSKKTLCPQCFN------EHDKSHIIIELSNLTSQLQE 66

Query: 458 AQQF 447
            Q+F
Sbjct: 67  QQEF 70


>UniRef50_Q5CRG1 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 346

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 515 HDGTNLLSNVGQVTSGLCSAQQFSLLVVYDRYFCVRT 405
           H  +NLLSN+ ++ SG  S+ +F+  + YD     +T
Sbjct: 295 HSNSNLLSNINKIHSGKSSSPKFTKFIFYDSVNITKT 331


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,215,565
Number of Sequences: 1657284
Number of extensions: 11165331
Number of successful extensions: 22171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22159
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)