Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060679.seq
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.98 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   0.98 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   9.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.1  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 460 EHKPDVTWPTFESKLVPS*SPRSTGKLNECNIKVLLVQSDV 582
           EH P +T  +  S  + S S + +G+L+E N+K+ L  SDV
Sbjct: 502 EHHPSIT--SVNSPFLYSPSKQPSGELDEENLKLRLQDSDV 540


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 246  VKQN*CIVIVSAYCSTSFLNFLNDYLFVLT*TKSELIRY 130
            + Q+   ++ S YC+TSFL+   +YL  L+  K E + Y
Sbjct: 1244 INQDDSPIVASRYCTTSFLHRFYEYL--LSGNKDEALTY 1280


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -2

Query: 322 NKRHHVCAVVVSIHRHHNEWLQNII--CKTKLMYCYCEC---LLFHIILK 188
           +K   +C + V    HH  W+ N +     +  + +  C   LLFH IL+
Sbjct: 171 SKHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLLCTIQLLFHSILR 220


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 295 QPHRRGVACL*AEGTAHLERHL 360
           QP +R +AC    G  H+ +HL
Sbjct: 517 QPEKRNLACGGLNGNVHIYKHL 538


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 426 SLLLCQDL*RTHCC*KREFRTKQMSFQVRSPFS 328
           SL+LC    R   C KRE R+K+      SP+S
Sbjct: 479 SLILCT---RNGTCWKRELRSKKREKSSSSPYS 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,477
Number of Sequences: 5004
Number of extensions: 50479
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)