Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060679.seq
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    28   5.4  
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826...    28   7.1  
04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520...    28   7.1  
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    27   9.4  

>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 367 SKLSFSTTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLV 507
           S +   T  CP++ +T+K      N   CC     + T   F+ K V
Sbjct: 168 SAVRLCTVTCPNEEITEKVARQNCNGTGCCTIELFEATLSAFQFKFV 214


>12_02_0474 +
           19482150-19482152,19482205-19482336,19482513-19482602,
           19482649-19482708,19482959-19483058,19483137-19483234,
           19483351-19483525,19484167-19484270
          Length = 253

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 620 HFNNKFQTLH*CLTSDCTKSTL 555
           HF+  + TLH C TSDC K  L
Sbjct: 165 HFSRPWFTLHPCGTSDCMKLLL 186


>04_04_0383 -
           24851496-24851681,24851785-24851882,24851964-24852063,
           24852741-24852899
          Length = 180

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 620 HFNNKFQTLH*CLTSDCTKSTL 555
           HF+  + TLH C TSDC K  L
Sbjct: 123 HFSRPWFTLHPCGTSDCMKLLL 144


>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 407 TFEGHTVVEKESFEPNKCLSKCAVPSAHKQATPRLCGCS 291
           T+E   +++  SFE NK LS+  +PS+  + +    G S
Sbjct: 32  TYEAEDILDLASFEGNKLLSQNPLPSSSSRNSTGCTGFS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,022
Number of Sequences: 37544
Number of extensions: 289317
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)