Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060679.seq
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)                    30   1.4  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              30   1.8  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   5.5  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           28   5.5  
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)                  27   9.7  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.7  

>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
          Length = 614

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 419 FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 312
           FC +   G+T V+ ES  PN C S    PS    +T
Sbjct: 575 FCQKISTGNTQVQPESLSPNICCSHLPQPSCVSPST 610


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 419  FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 312
            FC +   G+T V+ ES  PN C S    PS    +T
Sbjct: 1093 FCQKISTGNTQVQPESLPPNICCSHLPQPSCVSTST 1128


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 349 PSAQSLQLTNKRHHVCAVVVSIHRHH 272
           PS+ S+ + +  HH  + ++ IH HH
Sbjct: 144 PSSSSIIIIHHHHHPSSSIIIIHHHH 169


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +1

Query: 382 STTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLV 507
           S  VC SK  TQ    Y+  K     EHKPDV WP+ +  LV
Sbjct: 384 SVAVCWSKE-TQL-SIYSLVKTAKDIEHKPDVVWPSAQPILV 423


>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 159 STQTNNH*ENLRMMWNNKHSQ*QYINFVLQIMFCNHS 269
           S Q   H ENL+ M N       Y  F+L +  CN S
Sbjct: 445 SIQRMVHAENLQFMQNRDVYNTDYFKFILNLATCNRS 481


>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
          Length = 453

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -2

Query: 373 VSNQTNVFPSAQSLQLTNKR--HHVCAVVVS 287
           + +QTNV+P+A+  ++ N R  H + AV+V+
Sbjct: 231 ILDQTNVYPNARRRKMNNFRGFHRIAAVLVT 261


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 292  VSIHRHHNEWLQNIIC 245
            V+ +R HNEWLQ++ C
Sbjct: 6707 VAYNRAHNEWLQSVSC 6722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,939
Number of Sequences: 59808
Number of extensions: 387275
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)