Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060679.seq
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    35   0.042
AF003383-2|AAB54235.2|  344|Caenorhabditis elegans Hypothetical ...    30   1.2  

>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 382 KKRVSN-QTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQNIICKTKLMYC 224
           K  +SN +T +  ++Q+L  T    HV   V+ ++ +HN WLQNI  +T+   C
Sbjct: 71  KLEISNDETVILHTSQTLFETPVHSHVDTNVLRVY-YHNSWLQNITSETRATNC 123


>AF003383-2|AAB54235.2|  344|Caenorhabditis elegans Hypothetical
           protein ZC250.3 protein.
          Length = 344

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 273 TMNGYKTLSVKQN*CIVIVSAYCSTSFLNFLNDYLFVLT*TKSELIRYCFTLLVYILKAL 94
           T+N +    +K   C  I+  Y + S + ++N+    +   +SE ++ C   L+Y L+  
Sbjct: 44  TVNVFMMEIIKVVVCSAIM-IYTTKSVMKYINELKLAIFEHRSETLKVCIPALIYTLQNN 102

Query: 93  LTIIDISRNPKEYVCI 46
           L  I +S       CI
Sbjct: 103 LYYIALSHLEATTFCI 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,382
Number of Sequences: 27780
Number of extensions: 288989
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)