Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060679.seq
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    29   3.4  
At4g21270.1 68417.m03074 kinesin-like protein A (KATA)                 27   7.9  
At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR) domai...    27   7.9  

>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 289 SIHRHHNEWLQNIICKTKLMYCYCECLLFHIIL 191
           SIHR++  WL N+IC     +C+  C ++ + L
Sbjct: 337 SIHRNNEFWLLNVICP----FCFSFCRVYDLPL 365


>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
          Length = 793

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -2

Query: 427 IATSVSGPLKDTLLLKKRVSNQTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQNII 248
           I T+ SG L++T  L+K   N        Q L + N+R  +    VS+ R   E  ++++
Sbjct: 343 ILTAKSGSLEETCSLQKERLNMLE-----QQLAIANERQKMADASVSLTRTEFEEQKHLL 397

Query: 247 CK 242
           C+
Sbjct: 398 CE 399


>At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 498 TFKCRPSYVWLMFGTAVFLVGSIRSLL 418
           TF    +  WL FG+AV L+GS+  ++
Sbjct: 282 TFNIALALPWLWFGSAVELIGSVLGII 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,674,314
Number of Sequences: 28952
Number of extensions: 250258
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)