Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060678.seq
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 134 SRCVPQIHYNALLMNLIKKKKRL 202
           SRC P+IH + + +  I +  ++
Sbjct: 478 SRCPPEIHKSCICVRFIAEHTKM 500


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 134 SRCVPQIHYNALLMNLIKKKKRL 202
           SRC P+IH + + +  I +  ++
Sbjct: 478 SRCPPEIHKSCICVRFIAEHTKM 500


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +1

Query: 142 CPANSLQRFANEFN*KKKTSLSLISYYTVYNIM*ISDTRLTS 267
           CP    +R+   F  K     +   YY+ Y++  +  +R +S
Sbjct: 409 CPGRVRRRYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESS 450


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 355 KYTTVNDYEMTRLNRTQSTNRLLALKLYNLN 447
           KY+  N+Y     N   + N+ L  K Y +N
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,246
Number of Sequences: 438
Number of extensions: 2671
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)