Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060677.seq
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  34   0.11 
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                29   3.1  

>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +1

Query: 157  LYCDTQSCVLAGNIR*DIY*TTCTRGIKTFTSKAMRLSSFHYDVFFLFNFLK 312
            L C    C LA  +R   Y  TC       T KA + S FH  V F+F  LK
Sbjct: 1301 LCCRRPKCDLAFVVRDVCYSVTCFNSTACHTVKAHKASEFHPQVAFIFRGLK 1352


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 243 SFNTSSARRLVDILPYITCENTRLCVAIQE*DGGTELLGPSTQGS 109
           S NTS +   +D+ P ITC  T  C      +G   ++G +T GS
Sbjct: 144 STNTSGSSTTIDVCPIITCTTTSSCCTTF--NGSPTIIG-TTSGS 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,744,654
Number of Sequences: 59808
Number of extensions: 365156
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)