Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060676.seq
(630 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 184 2e-45
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 127 2e-28
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 119 5e-26
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 112 8e-24
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 111 1e-23
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 111 1e-23
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 111 2e-23
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 110 2e-23
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 110 3e-23
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 109 7e-23
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 106 4e-22
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 105 7e-22
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 105 9e-22
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 65 1e-09
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 60 6e-08
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 60 6e-08
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 60 6e-08
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 59 1e-07
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 55 2e-06
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 55 2e-06
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 54 4e-06
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 52 1e-05
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 52 2e-05
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 50 3e-05
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 49 1e-04
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 48 2e-04
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 48 2e-04
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 47 3e-04
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 46 6e-04
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 44 0.002
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 44 0.002
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 44 0.004
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 43 0.005
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 43 0.005
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 42 0.009
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 42 0.009
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 42 0.016
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 42 0.016
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 41 0.021
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 39 0.086
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 39 0.11
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 38 0.20
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 38 0.26
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 38 0.26
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 37 0.35
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 37 0.46
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 36 1.1
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 35 1.4
UniRef50_A0NFG9 Cluster: ENSANGP00000031041; n=3; Culicidae|Rep:... 35 1.9
UniRef50_A2T1U2 Cluster: OR-LDel; n=1; Brassica oleracea var. bo... 34 2.4
UniRef50_P97452 Cluster: Ribosome biogenesis protein BOP1; n=9; ... 34 2.4
UniRef50_UPI0000E483F4 Cluster: PREDICTED: similar to KIAA1875 p... 34 3.2
UniRef50_UPI000065EB6B Cluster: pleckstrin homology domain conta... 33 4.3
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 33 4.3
UniRef50_UPI000023D25F Cluster: hypothetical protein FG06418.1; ... 33 5.7
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 33 5.7
UniRef50_Q39LR2 Cluster: Putative uncharacterized protein; n=7; ... 33 5.7
UniRef50_A2F5H0 Cluster: Clan SB, family S8, subtilisin-like ser... 33 5.7
UniRef50_P43307 Cluster: Translocon-associated protein subunit a... 33 5.7
UniRef50_UPI000023CD3D Cluster: hypothetical protein FG08411.1; ... 33 7.5
UniRef50_A6G384 Cluster: Putative uncharacterized protein; n=1; ... 32 9.9
UniRef50_Q7R485 Cluster: GLP_480_88069_85913; n=2; Giardia intes... 32 9.9
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 184 bits (447), Expect = 2e-45
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRL+SEVEHL
Sbjct: 921 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLISEVEHL 980
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
KPYRDFYCHWTHRLPLRLARFFGV
Sbjct: 981 KPYRDFYCHWTHRLPLRLARFFGV 1004
Score = 173 bits (420), Expect = 4e-42
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV
Sbjct: 1008 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 1067
Query: 443 ASVHVSATLVATTRSRSGVIFT 508
ASVHVSATLVATTRSRSGVIFT
Sbjct: 1068 ASVHVSATLVATTRSRSGVIFT 1089
Score = 93.5 bits (222), Expect = 4e-18
Identities = 42/43 (97%), Positives = 42/43 (97%)
Frame = +1
Query: 502 FYGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELI 630
F GNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELI
Sbjct: 1088 FTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELI 1130
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 127 bits (307), Expect = 2e-28
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
A VLVIDEVYK+PRG+LDLAL+ADP ++FVI+LGDP Q Y+ NPDSSN+RL+ E +HL
Sbjct: 1108 ASVLVIDEVYKLPRGYLDLALLADPTVEFVIILGDPLQGSYNPTNPDSSNHRLIPEEDHL 1167
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
+P+ DFYC WT RLP +A FFGV
Sbjct: 1168 RPFIDFYCLWTRRLPRLVADFFGV 1191
Score = 67.7 bits (158), Expect = 2e-10
Identities = 36/81 (44%), Positives = 43/81 (53%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
NP G + P+L S AR GHRA+T+ +SQGST+ AP IF+D N
Sbjct: 1195 NPTRGHLAFASLNTTQSPLLVPSDSMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNS 1254
Query: 443 ASVHVSATLVATTRSRSGVIF 505
V LVA TRSRSGV F
Sbjct: 1255 NLVTNHVALVALTRSRSGVHF 1275
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 119 bits (287), Expect = 5e-26
Identities = 59/106 (55%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
A ++VIDEVYK+PRG+LDLA+ AD Q I+LGDP Q Y S NP+SSN RL SE++HL
Sbjct: 1096 ARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLASEIKHL 1155
Query: 183 KPYRDFYCHWTHRLPLRLARFFGVRLRTLKKVLSDVE-TIHTNLIL 317
+PY D YC W+HR+P +ARFF V K S VE T+ T+L+L
Sbjct: 1156 QPYMDMYCLWSHRIPRNVARFFRV------KTTSQVEGTVTTSLVL 1195
Score = 55.6 bits (128), Expect = 9e-07
Identities = 30/72 (41%), Positives = 41/72 (56%)
Frame = +2
Query: 320 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 499
LT+S AR G A T SSQGST+ PA I +D N + + + +LVA TRS+ G+
Sbjct: 1202 LTNSMNAARTLNDCGFAATTIASSQGSTYSHPACINLDKNSSQLSHAHSLVALTRSKVGI 1261
Query: 500 IFTETIDCSNQG 535
+FT + N G
Sbjct: 1262 MFTGDLSRLNPG 1273
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 112 bits (269), Expect = 8e-24
Identities = 53/84 (63%), Positives = 62/84 (73%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
A VLVIDEVYKMPRG+LDLA+ AD A+QFVILLGDP Q Y S +P SSN RL E +L
Sbjct: 971 ARVLVIDEVYKMPRGYLDLAIHADAAIQFVILLGDPIQGEYHSTHPSSSNARLSPEHRYL 1030
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
+PY DFYC W+ R+P +AR V
Sbjct: 1031 RPYVDFYCFWSRRIPQNVARVLDV 1054
Score = 56.8 bits (131), Expect = 4e-07
Identities = 27/64 (42%), Positives = 42/64 (65%)
Frame = +2
Query: 317 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 496
IL S++ +A+ A G+ A+T SSQGST PA + +D++ + +LVA TRS+SG
Sbjct: 1076 ILISARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNHSRRLSHQHSLVAITRSKSG 1135
Query: 497 VIFT 508
++FT
Sbjct: 1136 IVFT 1139
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 111 bits (267), Expect = 1e-23
Identities = 51/84 (60%), Positives = 63/84 (75%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
A +LVIDEVYKMPRG++DLA+ ADP ++FVILLGDP Q Y S +P+S N RL SE+ L
Sbjct: 988 ASILVIDEVYKMPRGYVDLAVAADPTVRFVILLGDPLQGEYHSSHPESQNKRLSSEIHRL 1047
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
Y D YC W+HR+P +AR FGV
Sbjct: 1048 LKYIDCYCLWSHRIPQCVARCFGV 1071
Score = 52.8 bits (121), Expect = 7e-06
Identities = 30/91 (32%), Positives = 43/91 (47%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
N EG++G L SQ +A+ G+ A T SSQGST++ P + +D N
Sbjct: 1075 NEHEGYVGFSSFIAPQDITLACSQSSAKTLRDAGYPATTVSSSQGSTYRTPINLLLDRNS 1134
Query: 443 ASVHVSATLVATTRSRSGVIFTETIDCSNQG 535
+ + +LVA TRS + T D QG
Sbjct: 1135 RRLSSAVSLVAATRSTMAINMTGDRDVLQQG 1165
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 111 bits (267), Expect = 1e-23
Identities = 52/99 (52%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
+LVIDE+YKMPRG+LDL+++ADPAL+ VI+LGDP Q Y S + DSSN+RL SE L P
Sbjct: 1038 ILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLP 1097
Query: 189 YRDFYCHWTHRLPLRLARFFGVR-LRTLKKVLSDVETIH 302
Y D YC W++R+P +AR F + + V+ V T H
Sbjct: 1098 YIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPH 1136
Score = 60.9 bits (141), Expect = 2e-08
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
N +G IG PH P+LT+S ++ G+R+ T SSQG TF PA I +D+
Sbjct: 1123 NAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYT 1182
Query: 443 ASVHVSATLVATTRSRSGVIF 505
+ + LVA TRSRSGV F
Sbjct: 1183 KWLSSANGLVALTRSRSGVQF 1203
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 111 bits (266), Expect = 2e-23
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
A +LVIDE+YK+PRG+LDLA+ +D +++FVI LGDP Q Y S +P SSN RL+ EV HL
Sbjct: 989 ARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHL 1048
Query: 183 KPYRDFYCHWTHRLPLRLARFFGVR 257
PY D+YC W++R+P +A FF V+
Sbjct: 1049 APYLDYYCLWSYRVPQDVAAFFQVQ 1073
Score = 55.2 bits (127), Expect = 1e-06
Identities = 31/82 (37%), Positives = 44/82 (53%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
NP GF + +LT+SQ + G+ A+T SSQGST+ I +D N
Sbjct: 1076 NPALGFARLSKQFPTTGRVLTNSQNSMLTMTQCGYSAVTIASSQGSTYSGATHIHLDRNS 1135
Query: 443 ASVHVSATLVATTRSRSGVIFT 508
+ + S +LVA TRSR+GV F+
Sbjct: 1136 SLLSPSNSLVALTRSRTGVFFS 1157
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 110 bits (265), Expect = 2e-23
Identities = 47/85 (55%), Positives = 63/85 (74%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
A VLVIDE+YKMPRG++DLA+ +DP ++ VI LGDP Q Y S +P S+N RLL+E HL
Sbjct: 1149 ARVLVIDEIYKMPRGYIDLAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLAEPHHL 1208
Query: 183 KPYRDFYCHWTHRLPLRLARFFGVR 257
Y D+YC W+HR+P +A FF ++
Sbjct: 1209 SMYLDYYCMWSHRVPQNVAAFFHIK 1233
Score = 51.6 bits (118), Expect = 2e-05
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 QEGFIG-RRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVA 445
Q GF +R+ P+ IL +SQ G+ A+T SSQGST+ A I +D N +
Sbjct: 1238 QPGFCRYQRELPNSR--ILANSQNAGHTLQQCGYAAVTIASSQGSTYDNAACIHLDRNSS 1295
Query: 446 SVHVSATLVATTRSRSGVIFT 508
+ + ++VA TRS+ GVIFT
Sbjct: 1296 LLSPAHSMVALTRSKVGVIFT 1316
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 110 bits (264), Expect = 3e-23
Identities = 46/83 (55%), Positives = 64/83 (77%)
Frame = +3
Query: 6 PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLK 185
P+LVIDE+YK+PRG+LDL+++ADP+++FV++LGDP Q Y S +P SSN RL SEV L
Sbjct: 935 PILVIDEIYKLPRGYLDLSIIADPSIEFVVILGDPLQGEYHSSSPHSSNNRLQSEVSRLS 994
Query: 186 PYRDFYCHWTHRLPLRLARFFGV 254
+ D YC W++R+P +AR F V
Sbjct: 995 RFIDCYCWWSYRIPKSIARLFNV 1017
Score = 56.4 bits (130), Expect = 5e-07
Identities = 32/79 (40%), Positives = 40/79 (50%)
Frame = +2
Query: 269 QEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVAS 448
+EGFI + + L +S TA GH ALT SSQG TF P I +D +
Sbjct: 1023 EEGFISTISSHRPNGKNLVNSISTADTMHQLGHHALTISSSQGMTFDTPVSILLDRHTVL 1082
Query: 449 VHVSATLVATTRSRSGVIF 505
+ S T VA TRS+ GV F
Sbjct: 1083 LSPSNTFVALTRSKKGVEF 1101
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 109 bits (261), Expect = 7e-23
Identities = 47/82 (57%), Positives = 61/82 (74%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
+LVIDE+YK+PRG+LDL+++ADP L VI+LGDP Q Y S +P SSN+ L SEV K
Sbjct: 1027 ILVIDEIYKLPRGYLDLSILADPTLSLVIILGDPLQGEYHSTSPHSSNHFLPSEVHRFKS 1086
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
Y D YC W+HR+P ++A FGV
Sbjct: 1087 YIDCYCFWSHRIPKQIASLFGV 1108
Score = 40.7 bits (91), Expect = 0.028
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
N EGF+ + + LT++ TA GH A+T S++ TF I +D +
Sbjct: 1112 NTNEGFVRALTSHPPNSKNLTNATNTALSLQQMGHHAITI-SARRVTFTEAHTILLDRHT 1170
Query: 443 ASVHVSATLVATTRSRSGVIFTETIDCSNQ--GLVRRHSLRLCSMT 574
+ + LVA TRSR+GV F + ++ G S LC T
Sbjct: 1171 NLLSPNNCLVALTRSRTGVYFVGNLHLASNSFGTNYMFSQALCQGT 1216
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 106 bits (255), Expect = 4e-22
Identities = 45/84 (53%), Positives = 64/84 (76%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
A +LVIDE+YK+PRG+LDL+L+ADP ++ VILLGDP Q Y S + SSN RL SE+ L
Sbjct: 934 AEILVIDEIYKLPRGYLDLSLIADPTVKLVILLGDPLQGEYHSTSAHSSNLRLSSEIPRL 993
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
P+ D+YC+W++R+P +A+ F +
Sbjct: 994 LPFIDYYCYWSYRVPKCVAKLFSL 1017
Score = 60.5 bits (140), Expect = 3e-08
Identities = 36/81 (44%), Positives = 42/81 (51%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
NP EGFI + S L +S + G A+T SSQG TF PA I +D N
Sbjct: 1021 NPSEGFIKTTLDFFPSANNLVNSHSVVHISEACGWNAVTISSSQGCTFSDPAFIHLDRNT 1080
Query: 443 ASVHVSATLVATTRSRSGVIF 505
A + S LVA TRSRSGV F
Sbjct: 1081 ALLSPSNCLVALTRSRSGVYF 1101
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 105 bits (253), Expect = 7e-22
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
+LV+DE+YK+PRG+LDL L+ADP++Q VI+LGDP Q Y S +P SSN RL SE L
Sbjct: 961 ILVVDEIYKLPRGYLDLILLADPSIQLVIMLGDPLQGEYHSSHPSSSNSRLESETTRLSK 1020
Query: 189 YRDFYCHWTHRLPLRLARFFGVR 257
Y D YC WT+R P +A FGV+
Sbjct: 1021 YIDCYCWWTYRCPKAVADLFGVK 1043
Score = 58.4 bits (135), Expect = 1e-07
Identities = 32/81 (39%), Positives = 41/81 (50%)
Frame = +2
Query: 263 NPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNV 442
N EGFI + + P L +S TA GH ALT SSQG T+ P + +D +
Sbjct: 1046 NSNEGFIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDRHS 1105
Query: 443 ASVHVSATLVATTRSRSGVIF 505
+ LVA TRSRSG+ F
Sbjct: 1106 LLITPQTALVALTRSRSGIYF 1126
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 105 bits (252), Expect = 9e-22
Identities = 45/82 (54%), Positives = 60/82 (73%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
+LVIDE+YK+PRG+LDL ++ADP L+ VI+LGDP Q Y S +P SSN++L SE L P
Sbjct: 1064 ILVIDEIYKLPRGYLDLCILADPCLELVIILGDPLQGEYHSTSPHSSNHQLQSETTRLLP 1123
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
+ D YC WT+R+P +A F V
Sbjct: 1124 FIDHYCWWTYRVPSHIADLFSV 1145
Score = 36.3 bits (80), Expect = 0.61
Identities = 24/62 (38%), Positives = 29/62 (46%)
Frame = +2
Query: 320 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 499
L +S TA G A T +SQG T I +D + + S TLVA TRS GV
Sbjct: 1172 LVNSVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTLVALTRSTVGV 1231
Query: 500 IF 505
F
Sbjct: 1232 EF 1233
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus
X|Rep: 158kDa replicase - Botrytis virus X
Length = 1413
Score = 65.3 bits (152), Expect = 1e-09
Identities = 29/80 (36%), Positives = 47/80 (58%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKPY 191
+++D+ K+P G+LD V P ++ IL GD QT Y +P+++ + L SE++ +P
Sbjct: 707 VILDDYGKLPPGYLDSYAVLHPNVELFILTGDHRQTTYHVSDPEANTFHLTSEIQEFRPL 766
Query: 192 RDFYCHWTHRLPLRLARFFG 251
+Y + THR P RLA G
Sbjct: 767 CAYYINATHRQPRRLANVLG 786
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 59.7 bits (138), Expect = 6e-08
Identities = 29/83 (34%), Positives = 48/83 (57%)
Frame = +3
Query: 6 PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLK 185
PV++ D+ K+P G ++ ++ + F+IL GD Q+VY +NP++ L VE +
Sbjct: 890 PVVIFDDYTKLPPGIIEALVMHHRNVSFIILTGDSRQSVYHEMNPEAYISALPEAVEVFE 949
Query: 186 PYRDFYCHWTHRLPLRLARFFGV 254
PY +FY + +HR +LA GV
Sbjct: 950 PYCEFYVNASHRNVKQLANKLGV 972
>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
Replicase - Lolium latent virus
Length = 440
Score = 59.7 bits (138), Expect = 6e-08
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 APVLVI-DEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEH 179
AP +V+ D+ K+P G++DL P++++VIL GD Q+ Y N D+ L + +E
Sbjct: 53 APQMVVFDDYGKLPHGYIDLFCQFHPSVEYVILTGDARQSTYYEYNSDAGIRNLPTNIEV 112
Query: 180 LKPYRDFYCHWTHRLPLRLARFFGV 254
K Y +Y + THR LA GV
Sbjct: 113 FKQYCGYYINCTHRNKQDLANMLGV 137
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 59.7 bits (138), Expect = 6e-08
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = +3
Query: 6 PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLK 185
P+LV D+ K+P G ++ ++ + F+IL GD Q+VY NP++ L VE
Sbjct: 930 PILVFDDYTKLPPGLIESVVMHHQNVVFIILTGDNRQSVYHETNPEAYIAALPEAVEIFS 989
Query: 186 PYRDFYCHWTHRLPLRLARFFGV 254
PY +FY + THR LA GV
Sbjct: 990 PYCEFYLNATHRNVKDLANKLGV 1012
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 58.8 bits (136), Expect = 1e-07
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
++++D+ K+P G++D L ++ VIL GD Q+V+ + DS L S +H K
Sbjct: 819 IVIMDDYGKLPAGYIDAYLAIKFNVELVILTGDQRQSVFHNDKRDSQIALLNSNTDHYKR 878
Query: 189 YRDFYCHWTHRLPLRLA 239
Y D+Y + THR P RLA
Sbjct: 879 YCDYYLNATHRQPRRLA 895
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/97 (34%), Positives = 49/97 (50%)
Frame = +3
Query: 6 PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLK 185
PVL++DE KMP G+L+ L +P +Q VI DP Q ++ + PD+ R+ S E +
Sbjct: 1128 PVLIVDEYGKMPAGWLETVLFLNPRVQMVIFTADPTQGIFRTRIPDAYCCRIPSSTEAIA 1187
Query: 186 PYRDFYCHWTHRLPLRLARFFGVRLRTLKKVLSDVET 296
Y Y + R +AR G L T + +ET
Sbjct: 1188 SYAHEYRRVSDRPAPGVARALG--LPTTSRRPGQIET 1222
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
V + D+ K+P GF+D L ++ IL GD Q+ + + +S L S V H P
Sbjct: 895 VTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTHHQ-DRESQIALLSSNVAHFSP 953
Query: 189 YRDFYCHWTHRLPLRLA 239
Y D+Y + THR P RLA
Sbjct: 954 YTDYYINATHRQPKRLA 970
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic
virus|Rep: Replicase - White ash mosaic virus
Length = 954
Score = 53.6 bits (123), Expect = 4e-06
Identities = 28/81 (34%), Positives = 37/81 (45%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKPY 191
++ D+ KMP GF+D L P + IL GD Q+ Y D+ V Y
Sbjct: 114 VIFDDYGKMPPGFIDAYLSIKPNVSNAILTGDQRQSTYHLQKSDAMTAEASDNVSAFTKY 173
Query: 192 RDFYCHWTHRLPLRLARFFGV 254
D+Y + THR P R A GV
Sbjct: 174 SDYYINATHRQPRRFANALGV 194
Score = 53.2 bits (122), Expect = 5e-06
Identities = 28/81 (34%), Positives = 37/81 (45%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKPY 191
++ D+ KMP GF+D L P + IL GD Q+ Y D+ V Y
Sbjct: 476 VIFDDYGKMPPGFIDAYLSIKPNVANAILTGDQRQSTYHLQKSDAMTAEASDNVSAFTKY 535
Query: 192 RDFYCHWTHRLPLRLARFFGV 254
D+Y + THR P R A GV
Sbjct: 536 SDYYINATHRQPKRFANALGV 556
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
V+VID+ K+P GF++ +V +P+L +I+ GD Q+ + N + +L E +
Sbjct: 901 VVVIDDYTKIPAGFIEAYIVTNPSLHTLIITGDSRQSFHHETNEQALTAKLAPFSEIAQQ 960
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
Y +Y + THR LA GV
Sbjct: 961 YCRYYLNATHRNKQDLANMLGV 982
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Strawberry mild yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
V+++D+ K+P G+ + P ++ +IL GD Q+V++ N ++ L S +E
Sbjct: 668 VVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLESNIEFWTQ 727
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
Y FY + THR RLA GV
Sbjct: 728 YCRFYVNATHRNVKRLANALGV 749
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3;
root|Rep: RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 50.4 bits (115), Expect = 3e-05
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
APV++ D+ K+P+GFL+ + P L+ IL GDP Q+ + N + +L +
Sbjct: 700 APVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIF 759
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
+Y + THR LA GV
Sbjct: 760 SALCRYYINATHRNVKELANKLGV 783
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
+++ D+ K+P G+++ + ++ VIL GD Q+VY D+S L E+
Sbjct: 797 IVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSK 856
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
Y +Y + THR LA GV
Sbjct: 857 YCRYYLNATHRNKKDLANMLGV 878
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
V + D+ K+P GF+D L ++ IL GD Q+ + +S L S +
Sbjct: 978 VTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTHHQ-ERESQISSLQSNIAQFSK 1036
Query: 189 YRDFYCHWTHRLPLRLA 239
Y D+Y + THR P RLA
Sbjct: 1037 YADYYLNATHRQPRRLA 1053
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Foxtail mosaic virus
Length = 1335
Score = 47.6 bits (108), Expect = 2e-04
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
+ ++D+ K+PRG+++ + PAL +IL GDP Q + D+ L
Sbjct: 664 IFIMDDYTKLPRGYIEAFVQNAPALSLLILTGDPNQAEHFETTEDNEINSLAPASVVFGK 723
Query: 189 YRDFYCHWTHRLPLRLARFFGVRLRT 266
+ ++ + THR P LA GV T
Sbjct: 724 FSRYHINATHRNPRNLANALGVYSET 749
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
APV+++D+ K+P G+++ + + ++L GDP Q+ Y NP++ L ++
Sbjct: 998 APVVIMDDYSKLPPGYIEAYVALKGQCKLLVLTGDPRQSHYHEENPEALISTLDPATDYF 1057
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
Y + + THR A GV
Sbjct: 1058 SKYCTYNINATHRNATTFANALGV 1081
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 46.4 bits (105), Expect = 6e-04
Identities = 27/83 (32%), Positives = 40/83 (48%)
Frame = +3
Query: 6 PVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLK 185
PV++ D+ K+P G+++ L + IL GD Q+VY N ++ L V +
Sbjct: 773 PVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYHESNNEAYIASLDEAVAYYA 832
Query: 186 PYRDFYCHWTHRLPLRLARFFGV 254
Y FY + THR LA GV
Sbjct: 833 NYCGFYLNATHRNVRSLANKLGV 855
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 44.4 bits (100), Expect = 0.002
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
+ V D+ K+P G+++ + + +IL GD Q+VY N + L + +P
Sbjct: 854 ICVFDDYGKLPPGYIEAFCMLHVNITCLILTGDSRQSVYHETNAQALIAHLPHAIMQFEP 913
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
+Y + THR P LA G+
Sbjct: 914 LCRYYLNATHRNPRNLANALGI 935
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 44.4 bits (100), Expect = 0.002
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
V++ D+ K+P G+++ + L +IL GDP Q+ Y N D+ +
Sbjct: 725 VVIFDDYTKLPPGYIETMVYHHHNLDLIILTGDPMQSAYHETNRDAYISLIPDASAIFSE 784
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
Y +F + THR LA GV
Sbjct: 785 YCEFNINATHRNVAELACLLGV 806
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 43.6 bits (98), Expect = 0.004
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKPY 191
++ D+ K+P GF++ + P ++ VIL GD Q + N ++ L +
Sbjct: 836 VIFDDYTKLPAGFIEAYSICQPNVELVILTGDAKQASHHESNDNAMIAGLDPAAFEFSKF 895
Query: 192 RDFYCHWTHRLPLRLARFFGV 254
+Y + THR P LA G+
Sbjct: 896 CRYYLNATHRNPRNLANALGI 916
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 43.2 bits (97), Expect = 0.005
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTV-YSSVNPDSSNYRLLSEVEHLK 185
V+++D+ K+PRG+++ + P L +IL GDP Q+ + S ++ N S V
Sbjct: 698 VVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESAEGNTINDLSPSPVV-FS 756
Query: 186 PYRDFYCHWTHRLPLRLARFFGV 254
Y +Y + THR LA GV
Sbjct: 757 AYARYYINATHRNNQDLANALGV 779
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Plantago asiatica mosaic potexvirus (P1AMV)
Length = 1385
Score = 43.2 bits (97), Expect = 0.005
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +3
Query: 3 APVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHL 182
+PV++ D+ K+P+G+L+ + L+ VIL GDP Q+ + N ++ +L
Sbjct: 724 SPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIY 783
Query: 183 KPYRDFYCHWTHRLPLRLARFFGV 254
+ +Y + T R LA GV
Sbjct: 784 SAFSRYYINATLRNSKFLANKLGV 807
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
V+V DE K+P +LDL L P ++ VILLGDP Q+ + S + +S L
Sbjct: 807 VVVFDEAQKLPGHYLDLYLAYHPDVELVILLGDPFQSGAPVTDQRSLLFPEMSPGRTLAR 866
Query: 189 YRDFYCHWTHRLPLRLARFFGV 254
+ FY + R+ + + +G+
Sbjct: 867 HATFYLTDSWRVNPTVGQAWGI 888
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 42.3 bits (95), Expect = 0.009
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLAL-VADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
L+IDE+ P G+LDL + + +P V L+GDPCQ+ Y S+ + + ++E L
Sbjct: 1363 LLIDEIQLYPPGYLDLVVNLVNPKEGTVFLIGDPCQSDYDSLRDRLTFSNIKPDIEMLLE 1422
Query: 189 YRDFYCHWTHR 221
+++ ++ R
Sbjct: 1423 DKEYKYNFLSR 1433
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 41.5 bits (93), Expect = 0.016
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 131
+L+IDE+ P G+LDL L+ P+ VI GDP Q+ Y S
Sbjct: 1208 ILIIDEIQLYPPGYLDLILLLIPSSCMVICAGDPVQSDYDS 1248
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 41.5 bits (93), Expect = 0.016
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 131
V++IDEV P G+LDLAL + V ++GDPCQ+ Y S
Sbjct: 1265 VVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQSDYDS 1305
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 41.1 bits (92), Expect = 0.021
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 131
++ DEV P G++DL L+ + F+ L GDPCQ+ Y S
Sbjct: 1435 VIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDS 1474
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 39.1 bits (87), Expect = 0.086
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS----VNPDSSNYRLLSEVEH 179
+VIDE+ +P G++DL ++A + ++LLGDP Q+ Y S V ++S + + ++
Sbjct: 988 VVIDEIGLLPPGYIDL-VIAVHRPRTLVLLGDPLQSTYHSKRDNVVLEASQEDIFARIKG 1046
Query: 180 LKPYRDFYCHWTHRLP 227
PY C ++HRLP
Sbjct: 1047 QLPY---LC-YSHRLP 1058
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVI-LLGDPCQTVYSS 131
++IDE+ P G+LDL L+ L+ + GDPCQ+ Y S
Sbjct: 1150 VIIDEIQLYPPGYLDLVLIITQHLELTFYITGDPCQSDYDS 1190
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 37.9 bits (84), Expect = 0.20
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 131
+VIDE+ P G++DL ++ +I+ GDPCQ+ Y S
Sbjct: 1455 VVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDS 1494
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 37.5 bits (83), Expect = 0.26
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 131
L++DE+ P G+LDL P + + GDPCQ+ Y +
Sbjct: 1280 LILDEIQLYPPGYLDLMCYLVPDRTIIAVAGDPCQSDYDN 1319
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 37.5 bits (83), Expect = 0.26
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 131
+++DE+ P G+LDL ++ P + I+ GDPCQ+ Y +
Sbjct: 1263 VILDELQLYPPGYLDLVMLLCPKGVYFIVGGDPCQSDYDN 1302
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 37.1 bits (82), Expect = 0.35
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDL-ALVADPALQFVILLGDPCQTVYSSVN 137
+ +DEV +P G+LDL L+A P ++++GDP Q+ Y S +
Sbjct: 1303 IFLDEVQLLPPGYLDLICLIAGPTAS-ILVMGDPAQSSYDSAD 1344
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 36.7 bits (81), Expect = 0.46
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLAL-VADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLK 185
++ DE P G+ DL L ++ P + FV LLGDPCQ+ Y + + + S V+ +
Sbjct: 1244 LVCFDEFQLYPPGYFDLCLSLSVPGVHFV-LLGDPCQSNYDNERDRGNFIGMRSNVDKIL 1302
Query: 186 PYRDF 200
R++
Sbjct: 1303 GGREY 1307
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 35.5 bits (78), Expect = 1.1
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKP 188
VL+ DE+ P G+ DL L+GDPCQ+ Y S + L + V L
Sbjct: 1239 VLIFDEMQLYPPGYFDLIFHLAKVDVHCFLVGDPCQSDYDSERDRLTLSALENNVSQLLD 1298
Query: 189 YRDF-YCHWTHR 221
R++ Y +HR
Sbjct: 1299 GREYPYKITSHR 1310
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 35.1 bits (77), Expect = 1.4
Identities = 18/80 (22%), Positives = 42/80 (52%)
Frame = +3
Query: 12 LVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKPY 191
+++D+ + P G+++L + + +++++ GD Q S++ +N L+ ++ P
Sbjct: 929 VILDDFTRFPAGWIELYMSLNTKSKYIVI-GDSRQADSHSMSGAFAN-ALVPAIDLFAPL 986
Query: 192 RDFYCHWTHRLPLRLARFFG 251
FY +WT R+ +A G
Sbjct: 987 SPFYLNWTWRMTRPVANALG 1006
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 368 RALTFCSSQGSTFQAPAQIFVDSNVASV-HVSATLVATTRSRSGVIFTETI 517
+A T+ S+QG+TF A I +D N+ V A A +RS+ ++F T+
Sbjct: 1049 KAFTYTSAQGATFDKVA-ILIDDNITRVCGDKAVYTALSRSKGEIVFVSTV 1098
>UniRef50_A0NFG9 Cluster: ENSANGP00000031041; n=3; Culicidae|Rep:
ENSANGP00000031041 - Anopheles gambiae str. PEST
Length = 308
Score = 34.7 bits (76), Expect = 1.9
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = -1
Query: 519 SMVSVKM-TPERERVVATR---VAETWTEATLESTKIWAGAW-KVEP*EEQKVSARW-PV 358
++ VK+ P RE V+A VA W+E L + K++ G W K P EQ + RW V
Sbjct: 149 NLAVVKLRNPIRETVMANGQSIVACLWSEIKLRNNKVYLGEWFKYHP--EQNPAFRWLDV 206
Query: 357 PAQTRAVC 334
P TR C
Sbjct: 207 PVITRKEC 214
>UniRef50_A2T1U2 Cluster: OR-LDel; n=1; Brassica oleracea var.
botrytis|Rep: OR-LDel - Brassica oleracea var. botrytis
(Cauliflower)
Length = 270
Score = 34.3 bits (75), Expect = 2.4
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +2
Query: 344 RVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTETIDC 523
+ C GTG+ A CSS GS + + SV S T + S +G + T C
Sbjct: 194 KYCLGTGYLACARCSSTGSLIISEPVSAIAGGNHSVSTSKTERCSNCSGAGKVMCPTCLC 253
Query: 524 SNQGLVRRHSLRL 562
+ + H R+
Sbjct: 254 TGMAMASEHDPRI 266
>UniRef50_P97452 Cluster: Ribosome biogenesis protein BOP1; n=9;
Eumetazoa|Rep: Ribosome biogenesis protein BOP1 - Mus
musculus (Mouse)
Length = 732
Score = 34.3 bits (75), Expect = 2.4
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = +3
Query: 54 DLALVADPALQFVILLGDPCQTVYSSVNPDS-----SNYRLLSEVEHLKPYRDFYCHWTH 218
D L+ +PAL +L+G Q + + P+ + + +SE EH + R CH
Sbjct: 463 DAVLLLNPALGDRLLVGSTDQLLEAFTPPEEPALQPARWLEVSEEEHQRGLRLRICH--- 519
Query: 219 RLPLRLARFFGVRLRTLKKVLSDVETIHTNLILY*HQVSRRRESVP 356
P+ + G R L VLS E HT ++L HQVSRRR P
Sbjct: 520 SKPVTQVTWHG-RGDYLAVVLSSQE--HTQVLL--HQVSRRRSQSP 560
>UniRef50_UPI0000E483F4 Cluster: PREDICTED: similar to KIAA1875
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to KIAA1875 protein -
Strongylocentrotus purpuratus
Length = 1827
Score = 33.9 bits (74), Expect = 3.2
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = +2
Query: 266 PQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVA 445
P I +PH +L + QQ + AG GH +++C G+ P ++ DS A
Sbjct: 135 PSFELISEAKSPHPITCVLYNEQQNEVISAGHGH-IMSWCFRYGAKHLVPQKVVQDSFFA 193
Query: 446 SVHVSATLVATTRSRS 493
+ V T SR+
Sbjct: 194 QDTFTMLAVENTASRA 209
>UniRef50_UPI000065EB6B Cluster: pleckstrin homology domain
containing, family A member 2; n=1; Takifugu
rubripes|Rep: pleckstrin homology domain containing,
family A member 2 - Takifugu rubripes
Length = 1024
Score = 33.5 bits (73), Expect = 4.3
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 253 FDYEPSRRFYRTSRQSTQILSYINIKSADGASLCRYRPSSAHFLLLS 393
+ + S+ + RQST + SY+ ++ G S R RP SA L LS
Sbjct: 774 YQHLQSKASFSEERQSTSVSSYVTLRRGPGNSASRERPHSALDLQLS 820
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 33.5 bits (73), Expect = 4.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSS 131
+++IDE+ P G+LD L I GDPCQ Y +
Sbjct: 1040 LVIIDELQLCPPGYLDFLLAISNKETKFIATGDPCQASYDN 1080
>UniRef50_UPI000023D25F Cluster: hypothetical protein FG06418.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG06418.1 - Gibberella zeae PH-1
Length = 723
Score = 33.1 bits (72), Expect = 5.7
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 419 QIFVDSNVASVHVSATLVATTRSRSGVIFTETIDC 523
Q++ ++ VAS+H S ATT SRS I TIDC
Sbjct: 682 QVYENTQVASIHSSIARAATTSSRSPQIL-RTIDC 715
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 33.1 bits (72), Expect = 5.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 9 VLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVN 137
++ DE+ P G+LD + P LGDP Q+ Y S+N
Sbjct: 1197 LVFFDEIQLFPPGYLDYTSMLLPTTTQFFCLGDPLQSDYDSMN 1239
>UniRef50_Q39LR2 Cluster: Putative uncharacterized protein; n=7;
Proteobacteria|Rep: Putative uncharacterized protein -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 811
Score = 33.1 bits (72), Expect = 5.7
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -2
Query: 593 LRKLKGWSLSIASKSGAVPGLDWNNRWFP*K*LQNGNELWRRE*QKRGQKPHWSR--RRF 420
L +L W +S + SG + G RW P + L++ WR RG P R +RF
Sbjct: 504 LARLADWGVSAGNYSGEIGGATPPLRWRPLRLLRSLPVFWRMLRVARGHLPTLERGLQRF 563
Query: 419 GQEPGKLNLERS 384
QE L +R+
Sbjct: 564 DQELATLVAQRA 575
>UniRef50_A2F5H0 Cluster: Clan SB, family S8, subtilisin-like serine
peptidase; n=2; Trichomonas vaginalis G3|Rep: Clan SB,
family S8, subtilisin-like serine peptidase -
Trichomonas vaginalis G3
Length = 924
Score = 33.1 bits (72), Expect = 5.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 105 DPCQTVYSSVNPDSSNYRLLSEVEHLKPYRDFY-CHWTH 218
DP Q +++ VN + N+R + +E + Y D+Y H TH
Sbjct: 154 DPTQDIHTLVNKTNLNHRKIVRIEAFRDYSDYYDGHGTH 192
>UniRef50_P43307 Cluster: Translocon-associated protein subunit
alpha precursor; n=51; Euteleostomi|Rep:
Translocon-associated protein subunit alpha precursor -
Homo sapiens (Human)
Length = 286
Score = 33.1 bits (72), Expect = 5.7
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>UniRef50_UPI000023CD3D Cluster: hypothetical protein FG08411.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG08411.1 - Gibberella zeae PH-1
Length = 635
Score = 32.7 bits (71), Expect = 7.5
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +1
Query: 421 NLRRLQCGFCPRFCYSRRHNSFPFWSHFY-GNHRLFQSRP 537
NL LQC C R+CY SF W R + RP
Sbjct: 433 NLTILQCAACLRYCYGSEDQSFSAWERLQEAQERWWAERP 472
>UniRef50_A6G384 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 260
Score = 32.3 bits (70), Expect = 9.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 596 VLRKLKGWSLSIASKSGAVPGLDWNNRWF 510
++ +L +SLSIAS GAV W N WF
Sbjct: 204 LVERLASYSLSIASYRGAVKEWTWRNGWF 232
>UniRef50_Q7R485 Cluster: GLP_480_88069_85913; n=2; Giardia
intestinalis|Rep: GLP_480_88069_85913 - Giardia lamblia
ATCC 50803
Length = 718
Score = 32.3 bits (70), Expect = 9.9
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 401 TFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTETIDCS----NQGLVRRHSLRLCS 568
T A +D A+ HV+AT + T SRS IF I+CS N+ ++R L L
Sbjct: 182 TTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVD 241
Query: 569 MTNPSTSS 592
+ S
Sbjct: 242 LAGSERQS 249
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,458,288
Number of Sequences: 1657284
Number of extensions: 12765696
Number of successful extensions: 39259
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 37827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39241
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -