Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060676.seq
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    28   0.97 
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    26   3.9  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   5.2  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   5.2  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    26   5.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.8  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   6.8  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    25   9.0  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   9.0  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +2

Query: 356  GTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTETIDCSNQG 535
            G  H  LT C+    T+ A   +  DSN+    +  +  +     S VIF ET+D S   
Sbjct: 849  GADHIRLTTCNPL--TYSAGMVVPNDSNITLYEILYS--SEEEMPSNVIFYETMDVSLSD 904

Query: 536  LVRRHSLRL 562
            L R+  +RL
Sbjct: 905  LDRKRLVRL 913


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +1

Query: 316 YINIKSADGASLCRYRPSSAHFLLL---SRFNFPGSCPNLRRLQCGFC--PRFCYSRRHN 480
           Y+  K AD  S C Y     H LLL   +R N  G+ P   R   G+    ++     H+
Sbjct: 146 YVCCKEADLLSACVYPKEYEHDLLLQSQARINLHGTNPTAGRSLRGWAIDAKYVAENIHS 205

Query: 481 SFPFW 495
           S   W
Sbjct: 206 SASTW 210


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 274 RFYRTSRQSTQILSYINIKSADGASLCRYRPSSAHFLLLSRFNFPGSCPNLRRLQCGFCP 453
           R+      +T +  +  I  A   S  +  P ++  L L+  +   + PNLRR    F P
Sbjct: 374 RYIHRGPSATSLNKFSMISDAASKSRAKLPPLTSGSLKLNTLDISNT-PNLRRFSSSFGP 432

Query: 454 R 456
           R
Sbjct: 433 R 433


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 70  LIQPSNLSSFSETHAKPSILPSIRTL 147
           LI PS LS  S T  KP++ PS+  L
Sbjct: 8   LITPSPLSDISTTINKPNVHPSMSLL 33


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 79  PSN--LSSFSETHAKPSILPSIRTLLIIVCFPKSNISNRIVIFTVTGPT 219
           P+N   ++    HAK  +L S   LL  +  PK+ I  ++ I+   G T
Sbjct: 73  PANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDTAGLT 121


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 520  IDGFRKNDSRTGTSCGDESSRNVDRSHIGVDEDLG 416
            ID   K D+++  +  +    N D+  +G +E+LG
Sbjct: 4197 IDNHPKMDAKSTFASAEADEENTDKGIVGENEELG 4231


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 115 WHGSPRRMTNWRAGSATRARSRKPR 41
           W G  RR +NW+ G   +  S  P+
Sbjct: 77  WKGLFRRQSNWKDGRCKKVESMLPQ 101


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 520 IDGFRKNDSRTGTSCGDESSRNVDRSHIGVDE 425
           IDG      RT +S GD +S ++  SH   DE
Sbjct: 22  IDGSDDQSDRTRSSSGDSTSNSLKLSHHISDE 53


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 428 VDSNVASVHVSATLVATTRSRSGVIFTETIDCSNQGLVRRHSL-RLCSM 571
           ++SN   +H+   LV   R   G +  +T+D   Q  +   S  +L SM
Sbjct: 97  IESNAELLHIMKELVNLDREEEGSVPLKTLDAIQQQRLHNPSFEKLASM 145


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 57  LALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLLSEVEHLKPYRDF 200
           + LV   A   ++ L  P   VYS V      +  + E+EH   ++DF
Sbjct: 10  IKLVTFDAFGTILHLSKPVPIVYSEVAQKYGVHATIDEIEH-NTFKDF 56


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 511 FRKNDSRTGTSCGDESSRNVDRSHIGVDEDLGR 413
           F K+DS   TS GD++S+  D S       LGR
Sbjct: 188 FSKDDSLLATSSGDQTSKVFDLSTQQCITRLGR 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,296
Number of Sequences: 5004
Number of extensions: 52937
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)