Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060676.seq
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 31 1.00
06_03_0066 - 16145398-16145475,16145638-16145700,16146432-161465... 30 1.7
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 29 2.3
11_06_0092 + 19973364-19975983,19976272-19976648 29 3.0
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 4.0
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105... 28 5.3
06_02_0233 + 13315579-13316046 27 9.3
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 27 9.3
03_05_0173 + 21502765-21504216 27 9.3
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 30.7 bits (66), Expect = 1.00
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +3
Query: 9 VLVIDEVYKMPR--GFLDLALVADPALQFVILLGDPCQ---TVYSSVNPDSSNYRLLSE 170
+LV+DE ++ G + L L P L+ IL+GD CQ TV S V D+S R L E
Sbjct: 520 LLVVDEAAQLKECEGLIPLRL---PTLKHAILIGDECQLPATVKSKVCEDASFGRSLFE 575
>06_03_0066 -
16145398-16145475,16145638-16145700,16146432-16146518,
16147168-16147246,16147359-16147478,16149289-16149440
Length = 192
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 430 RLQCGFCPRFCYSRRHNSFPFWSHFY 507
R++C P FC +R+ N +PF FY
Sbjct: 117 RVECPKYPGFCLTRQKNEYPFIEVFY 142
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +2
Query: 275 GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVH 454
GF G +P + Y L S+ A+V +GTG +S+ + + V + + +V
Sbjct: 167 GFSGGAGSPDQDYGSLQSNINAAKVTSGTGLNNYLLSNSKNAQSTSAFSGSVPAGLGNVS 226
Query: 455 VSATLVATTRSRSGVIFTETIDCSNQGLV 541
S+ + RS F + I S Q ++
Sbjct: 227 -SSRSEGAYKKRSLSEFLQNIPSSKQSII 254
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 629 MSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWN 522
+S PSSF LR+L SL+ + SGA+P WN
Sbjct: 186 LSGSIPSSFGQ-LRRLSFLSLAFNNLSGAIPDPIWN 220
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 327 QVSRRRESVPVQAIERSLFAP-LKVQLSRLLPKSSSTPMWLLST 455
Q SR+R+ P E+ + AP LK ++ + P + TP + LST
Sbjct: 1187 QKSRKRKKAPASP-EQPIIAPLLKTDIASVTPATQHTPGFTLST 1229
>07_03_0587 +
19708841-19709282,19709693-19709883,19710429-19710568,
19710955-19711380,19711540-19712685,19712805-19712934,
19713257-19713492,19713575-19713710,19713793-19713869,
19714692-19714798,19714896-19714996
Length = 1043
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +3
Query: 138 PDSSNYRLLSEVEHLKPYRDFYCHWTHRLPLRLARFFGVRLRTLKKVLSDVETIHTNLIL 317
P S + L +HLK D C + LP + FG + +L+K L + +++
Sbjct: 683 PVSKTFHALITDKHLKVQPDDSCVFEELLPFSENKLFGASI-SLQKALEILLLCRGSILK 741
Query: 318 Y*HQVSRRRESVPVQAIERSLFAPL 392
+SR+ P Q I R L + L
Sbjct: 742 DEVAISRKASKTP-QTIMRELVSVL 765
>06_02_0233 + 13315579-13316046
Length = 155
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 115 WHGSPRRMTNWRAGSATRARSRKP 44
W SPR W++ +A+R R R+P
Sbjct: 43 WRPSPRYGEAWQSRTASRGRGRRP 66
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 299 PHKSYPILTSSQQTARVCAGTG-HRALTFCSS---QGSTFQAPA-QIFVDSNVASVHVSA 463
P P T++ T+ VC+G G R L + S Q + + A ++ +D +A VH +
Sbjct: 267 PDAPPPAATATATTSSVCSGNGDRRQLNWRDSHNNQSAEWSASQDELDLDDELAGVHRRS 326
Query: 464 TLVATTRSRSGVI 502
++ RSR+ +
Sbjct: 327 AARSSKRSRTAEV 339
>03_05_0173 + 21502765-21504216
Length = 483
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 401 TFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTETIDCSNQ 532
T Q Q+ +++ A VS LVA+ +S S + T T SNQ
Sbjct: 292 TDQNNQQLMANTHSAPTPVSTPLVASNQSESSAMTTTTTTNSNQ 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,906
Number of Sequences: 37544
Number of extensions: 355763
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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