Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060676.seq
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           32   0.33 
SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_26488| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_17582| Best HMM Match : Fukutin-related (HMM E-Value=5.9e-13)       27   9.5  
SB_38352| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = +2

Query: 350 CAGTGHRA--LTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTETIDC 523
           C    HR   L + SS   + Q P      +   S  V+A+ VA++ + +GV+ TET   
Sbjct: 321 CGDRAHRESLLPYSSSNTPSKQNPVSDSASTVTQSTEVTASTVASSAANAGVVLTETQFA 380

Query: 524 SNQGLVRRHSLRLCSMTNPSTSSTHLQMNLEA 619
           +      R S +  +  NP   +T     ++A
Sbjct: 381 TKSLNKIRPSCKEPAHLNPLPMTTETPPEIQA 412


>SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +2

Query: 284 GRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSA 463
           GR ++P  +   + + Q T      T    + F  ++     A    F+ S ++ + VSA
Sbjct: 45  GRDESPFPAASCVNAFQDTDSPLTDTRSSVIIFRKAR----MARVLDFISSLLSFISVSA 100

Query: 464 TLVAT----TRSRSGVIFTETIDCSNQGLVRRHSL 556
           T  +T    T  RSG+ ++ + DC++      HSL
Sbjct: 101 TRPSTHSQNTLKRSGIGYSLSYDCNSPTRTHSHSL 135


>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 455 VSATLVATTRSRSGVIFTETIDCSNQGLVRRHSLRL 562
           V AT +    SRS  IF+ T++CS +GL  +  +R+
Sbjct: 115 VGATNMNERSSRSHAIFSITVECSEKGLDGQQHVRM 150


>SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 484 FPFWSHFYGNHR---LFQSRPGTAPLFEAMLNDQPFNFLNTFAN 606
           FP ++ +  NHR   +  +RP T PL  ++    PF     +A+
Sbjct: 56  FPLYTLYASNHRSPYILSTRPTTVPLIYSLRVQPPFPLYTLYAS 99


>SB_26488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +3

Query: 336 RRRESVPVQAIERSLFAPLKVQLSRLLPK 422
           + +ES+ ++AI+R++ + L V+ S+ LPK
Sbjct: 112 KTKESIRIRAIKRAIRSKLSVKSSKKLPK 140


>SB_17582| Best HMM Match : Fukutin-related (HMM E-Value=5.9e-13)
          Length = 411

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 488 GNELWRRE*QKRGQKPHWSRRRFGQEPGKLNLERSKK*ALDGL 360
           GN LW     +RG++   S    G+  G  N    KK  LDG+
Sbjct: 134 GNFLWHGAVSERGEEIPKSEIEIGKREGAFNRFSVKKETLDGI 176


>SB_38352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 291 RRPIKPS*GFVVERRRIELGEEEVG-GSSDSKNHDT 187
           ++P K   GF+VE RR E  + E+G G+  + N +T
Sbjct: 13  KQPAKKGKGFLVESRRKENNKSEIGFGARAASNANT 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,904,733
Number of Sequences: 59808
Number of extensions: 409699
Number of successful extensions: 1187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)