Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060676.seq
         (630 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          24   3.5  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    24   4.6  
AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450 pr...    24   4.6  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   6.1  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    23   6.1  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = -3

Query: 526 GTIDGFRKNDSRTGTSCGDESSRNVDRSHIGVDEDLGRSLES*TLRGAKSERSMACTGTD 347
           GT+   +K  SR+ +    +SSR+  RS +       RS  S +       RS + T T 
Sbjct: 396 GTVGDGKKRSSRSRSKSLSKSSRSRSRS-LSRSVSRSRSRGSRSRSRTSQSRSRSKTRTS 454

Query: 346 SRRLLT*C*YR--IRFVWIVSTSDKTFLRVRSRTPKNRARRR 227
             R  T    R  +R      T   T +   +  P+ R RRR
Sbjct: 455 RSRSRTPLPARGHVRARLTRRTIPPTRVAAAAAAPEGRRRRR 496


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 118 VWHGSPRRMTNWRAGSATRARSRKPR 41
           +++GS RR++++ +  + +  SRKPR
Sbjct: 171 IFYGSRRRLSSFTSIRSVKNDSRKPR 196


>AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 237 ARFFGVRLRTLKKVLSDVETIHTNLILY*HQVSRRRE 347
           AR  G+R++T+K V      +  + I Y  + S RR+
Sbjct: 232 ARALGIRVQTMKDVSDFFMNVVRDTIRYREEHSERRD 268


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 281 IGRRDNPHKSYPILTSSQQTARVCAGT 361
           +G RD PH S    ++S ++ R   G+
Sbjct: 479 LGNRDEPHSSSGNWSASSESGRTSIGS 505


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 281 IGRRDNPHKSYPILTSSQQTARVCAGT 361
           +G RD PH S    ++S ++ R   G+
Sbjct: 480 LGNRDEPHSSSGNWSASSESGRTSIGS 506


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,286
Number of Sequences: 2352
Number of extensions: 13102
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)