Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060676.seq
(630 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 34 0.48
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 33 0.83
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 33 0.83
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 33 0.83
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 33 0.83
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 33 0.83
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 33 0.83
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 33 0.83
AK096213-1|BAC04726.1| 127|Homo sapiens protein ( Homo sapiens ... 31 4.5
U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jag... 30 5.9
U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein. 30 5.9
U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jag... 30 5.9
BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille synd... 30 5.9
BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille synd... 30 5.9
BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille synd... 30 5.9
BC034235-1|AAH34235.1| 351|Homo sapiens coiled-coil domain cont... 30 5.9
AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille synd... 30 5.9
AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein J... 30 5.9
AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein. 30 5.9
U19176-1|AAC13784.1| 838|Homo sapiens P protein protein. 30 7.8
M99564-1|AAA36477.1| 838|Homo sapiens P protein protein. 30 7.8
BC012097-1|AAH12097.1| 814|Homo sapiens OCA2 protein protein. 30 7.8
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 30 7.8
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 33.9 bits (74), Expect = 0.48
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDH 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.83
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.83
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.83
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.83
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.83
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.83
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.83
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 ETHAKPSILPSIRTLLIIVC---FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSR 273
+ +P PS T ++ V FP +NI +V FT G DF+ LD+S F Y
Sbjct: 72 DVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDY 130
Query: 274 RFY 282
+FY
Sbjct: 131 QFY 133
>AK096213-1|BAC04726.1| 127|Homo sapiens protein ( Homo sapiens
cDNA FLJ38894 fis, clone NOVAR1000102. ).
Length = 127
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 99 LGDPCQTVYSSVNPDSSNYRLLSEVEHLKPYRDFYCHWTHRLPLRL 236
L DP S+ +P+ S YR++ E H + + HW H L+L
Sbjct: 38 LRDPAPLPSSATDPERS-YRMILETAHFRNHVAGVVHWIHHSRLKL 82
>U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jagged
protein.
Length = 1214
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 531 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 585
>U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jagged
1 protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>BC034235-1|AAH34235.1| 351|Homo sapiens coiled-coil domain
containing 109A protein.
Length = 351
Score = 30.3 bits (65), Expect = 5.9
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 264 TLKKVLSDVETIHTNLILY*HQVSRRRESVPVQAIERSLFAPL---KVQLSRLLPKSSST 434
TL V + V+ ++T L + HQ+++ RE + + APL ++++SR K ++
Sbjct: 175 TLNDVKTLVQQLYTTLCIEQHQLNKERELIERLEDLKEQLAPLEKVRIEISRKAEKRTTL 234
Query: 435 PMW 443
+W
Sbjct: 235 VLW 237
>AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein
Jagged 1 protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein.
Length = 1218
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 618 ASKFICKCVEEVEGLVIEHSLKEWRRTRP*LEQSMVSVKM----TPERERVVATRV 463
AS + CKC E+ EG H LK+ RT P +V M TPE R +++ V
Sbjct: 544 ASDYFCKCPEDYEGKNCSH-LKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNV 598
>U19176-1|AAC13784.1| 838|Homo sapiens P protein protein.
Length = 838
Score = 29.9 bits (64), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 525 EQSMVSVKMTPERERVVATRVAETWTEATLES 430
EQ+ + +KM PE +R++A V W A S
Sbjct: 706 EQTALLIKMVPEEQRLIAAIVLVVWVSALASS 737
>M99564-1|AAA36477.1| 838|Homo sapiens P protein protein.
Length = 838
Score = 29.9 bits (64), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 525 EQSMVSVKMTPERERVVATRVAETWTEATLES 430
EQ+ + +KM PE +R++A V W A S
Sbjct: 706 EQTALLIKMVPEEQRLIAAIVLVVWVSALASS 737
>BC012097-1|AAH12097.1| 814|Homo sapiens OCA2 protein protein.
Length = 814
Score = 29.9 bits (64), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 525 EQSMVSVKMTPERERVVATRVAETWTEATLES 430
EQ+ + +KM PE +R++A V W A S
Sbjct: 682 EQTALLIKMVPEEQRLIAAIVLVVWVSALASS 713
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 29.9 bits (64), Expect = 7.8
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 163 FPKSNISNRIVIFTVTGPTDFLFA*LDSSAFDYEPSRRFY 282
FP +NI +V FT G DF+ LD+S F Y +FY
Sbjct: 68 FPANNIVKFLVGFTNKGTEDFIVESLDAS-FRYPQDYQFY 106
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,028,351
Number of Sequences: 237096
Number of extensions: 1887551
Number of successful extensions: 4767
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4767
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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