Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060676.seq
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF149288-1|AAF99087.1|  644|Caenorhabditis elegans KRP85 protein.      29   2.7  
AC024801-1|AAK68513.1|  646|Caenorhabditis elegans Kinesin-like ...    29   2.7  
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    27   8.4  
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +2

Query: 275 GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRAL-----TFCSSQGSTFQAPAQIFVDSN 439
           G  G R++P    PI+TSS  ++   + + HR +        SS  ++   P++   D +
Sbjct: 168 GKSGSRNSPE---PIMTSSASSSSASSSSSHRPIRQSVSIATSSPATSSSTPSKYNPDPS 224

Query: 440 VASVHVSATLVATTRSRSGVIFTETI-DCSNQGLVRRH 550
           + +V V  + VA    R  V     + +C N  L R H
Sbjct: 225 LRAVVVDGSNVAMLHGRKEVFSCAGLRECLNYFLERGH 262


>AF149288-1|AAF99087.1|  644|Caenorhabditis elegans KRP85 protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 455 VSATLVATTRSRSGVIFTETIDCSNQGLVRRHSLRLCSMTNPSTSS 592
           V AT +    SRS  +FT TI+    GLV +  L+L  +      S
Sbjct: 197 VGATAMNLESSRSHAMFTVTIESCRNGLVTQGKLQLVDLAGSERQS 242


>AC024801-1|AAK68513.1|  646|Caenorhabditis elegans Kinesin-like
           protein protein 20 protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 455 VSATLVATTRSRSGVIFTETIDCSNQGLVRRHSLRLCSMTNPSTSS 592
           V AT +    SRS  +FT TI+    GLV +  L+L  +      S
Sbjct: 199 VGATAMNLESSRSHAMFTVTIESCRNGLVTQGKLQLVDLAGSERQS 244


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 504 KMTPERERVVATRVAETWTEATLESTKIWAGAWKVEP*EEQKVSARWP 361
           K TP +E VV + +  T     LES++   G W  E   ++K   + P
Sbjct: 410 KCTPVKECVVESSIQFTCDNKCLESSRRCDGVWDCEDKSDEKGCDKCP 457


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/87 (25%), Positives = 35/87 (40%)
 Frame = +2

Query: 317 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 496
           ILT      R+CA   H+  T   S  ++   P+   + S + S   S     +  S SG
Sbjct: 19  ILTCGHSLCRMCALKAHQPSTSSGSSSTSSPRPSTPGILSQILSSASSPISPQSAGSSSG 78

Query: 497 VIFTETIDCSNQGLVRRHSLRLCSMTN 577
              T ++  S+ G      L + S T+
Sbjct: 79  ASDTMSLCVSDNGDHESDKLSVVSETD 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,242
Number of Sequences: 27780
Number of extensions: 296909
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)