Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060676.seq
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10040.1 68416.m01204 expressed protein  est match                  31   0.83 
At2g27930.1 68415.m03385 zinc-binding family protein similar to ...    30   1.5  
At5g57230.1 68418.m07150 expressed protein                             29   1.9  
At5g61670.2 68418.m07738 expressed protein                             29   2.5  
At5g61670.1 68418.m07737 expressed protein                             29   2.5  
At5g58840.1 68418.m07373 subtilase family protein contains simil...    29   2.5  
At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1...    29   2.5  
At1g75210.1 68414.m08737 5' nucleotidase family protein contains...    28   4.4  
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont...    28   5.9  
At4g24750.1 68417.m03542 expressed protein                             28   5.9  

>At3g10040.1 68416.m01204 expressed protein  est match
          Length = 431

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -1

Query: 588 EVEGLVIEHSLKEWRRTRP*LEQSMVSVKMTPERERVVATRVAETWTEATLESTKIWAGA 409
           E EG+ +E    +W R R   E+ M   K+  +R R+   R+      + +E  ++ +  
Sbjct: 362 EWEGVEMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLETERMILMLRRSEIELNELQSSG 421

Query: 408 WKVEP 394
            +V+P
Sbjct: 422 TRVDP 426


>At2g27930.1 68415.m03385 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 135

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 388 LSRFNFPGSCPNLRRLQCGFCPRFCYSRRHNSFPFW--SHFYGNHRLFQSR 534
           L R NF   CP  R      C  FC S ++ +F F+  S F+ +H + Q R
Sbjct: 10  LLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIR 60


>At5g57230.1 68418.m07150 expressed protein 
          Length = 160

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 418 PNLR--RLQCGFCPRFCYSRRHNSFPFWSHFY 507
           PN++  R++C   P FC +R+ N +PF   F+
Sbjct: 79  PNIKFMRVECPKYPGFCITRQKNEYPFIEIFH 110


>At5g61670.2 68418.m07738 expressed protein
          Length = 307

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +2

Query: 344 RVCAGTGHRALTFCSSQGS-TFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTETID 520
           + C GTG+ A   CSS G+     P       N  S+    T   +  S +G +   T  
Sbjct: 231 KYCLGTGYLACARCSSTGALVLTEPVSAIAGGN-HSLSPPKTERCSNCSGAGKVMCPTCL 289

Query: 521 CSNQGLVRRHSLRL 562
           C+   +   H  R+
Sbjct: 290 CTGMAMASEHDPRI 303


>At5g61670.1 68418.m07737 expressed protein
          Length = 307

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +2

Query: 344 RVCAGTGHRALTFCSSQGS-TFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTETID 520
           + C GTG+ A   CSS G+     P       N  S+    T   +  S +G +   T  
Sbjct: 231 KYCLGTGYLACARCSSTGALVLTEPVSAIAGGN-HSLSPPKTERCSNCSGAGKVMCPTCL 289

Query: 521 CSNQGLVRRHSLRL 562
           C+   +   H  R+
Sbjct: 290 CTGMAMASEHDPRI 303


>At5g58840.1 68418.m07373 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]; non-consensus acceptor site TT at exon 6
          Length = 713

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
 Frame = +2

Query: 287 RRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSAT 466
           +RDN H  Y +L+ +  +    AG      TF      +     Q  + +    ++ + T
Sbjct: 484 KRDNRHVKYSVLSGTSMSCPHVAGVAAYIKTFHPEWSPSM---IQSAIMTTAWPMNATGT 540

Query: 467 LVATTRSRSGVIFTETIDCSNQGLVRR-----HSLRLCSMTNPSTS 589
            VA+T    G    + I   N GLV       H   LC +   +TS
Sbjct: 541 AVASTEFAYGAGHVDPIAAINPGLVYEIGKSDHIAFLCGLNYNATS 586


>At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1) /
           HD-ZIP protein 1 identical to Homeobox-leucine zipper
           protein HAT1 (SP:P46600) [Arabidopsis thaliana]
          Length = 282

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 547 APYQALIGTIDGFRKNDSRTGTS---CGDESSRNVDRS 443
           +P   +  T+ G R++  R GTS   CGD+    +DRS
Sbjct: 79  SPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRS 116


>At1g75210.1 68414.m08737 5' nucleotidase family protein contains
           Pfam profile: PF05761 5' nucleotidase family
          Length = 642

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 147 SNYRLLSEVEHLKPYRDFYCHWTHRLPL 230
           SN RL S  ++ +P  DF  H  H LPL
Sbjct: 615 SNLRLYSPDKYYRPSEDFMSHEFHLLPL 642


>At5g10660.1 68418.m01234 calmodulin-binding protein-related
           contains weak similarity to calmodulin-binding proteins
          Length = 407

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 527 NQGLVRRHSLRL--CSMTNPSTSSTHLQMN 610
           NQ L+RR S      S+T+PSTSS H  +N
Sbjct: 78  NQKLLRRRSFDHPPSSLTSPSTSSAHRSLN 107


>At4g24750.1 68417.m03542 expressed protein 
          Length = 260

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 301 WIVSTSDKTFLRVRSRTPKNRARRRGSRWV 212
           + +S S+K  L VR  + +N+A  +GS WV
Sbjct: 98  YAISLSNKPLLDVRPSSERNKAWIKGSTWV 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,709
Number of Sequences: 28952
Number of extensions: 284184
Number of successful extensions: 887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)