Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060675.seq
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      48   1e-06
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    46   3e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    43   3e-05
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    35   0.011
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    27   1.7  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    25   6.9  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.9  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   9.1  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   9.1  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   9.1  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 299 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHV 448
           C  CG  +  GR+I A     HP CF+C+ C+  L   GF    G+  CH+
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHL 308



 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +2

Query: 260 YCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRAL 439
           +C+  +   +A  C KC + ++G  +K  +  +H  C+ C  CN  L D G+       +
Sbjct: 365 WCQTCYDNKYAVKCKKCRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPI 424

Query: 440 CHVCNA 457
           C  C A
Sbjct: 425 CRPCKA 430



 Score = 31.9 bits (69), Expect = 0.079
 Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
 Frame = +2

Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECN-VELADAGFIKHA 427
           G+ YC  D+   F+P C  C   +  + +   N  +H     C  C+ V   +   I   
Sbjct: 302 GKFYCHLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRD 361

Query: 428 GRALCHVCNARIKADGLQNYMCHKCHG*LTENLYVIGEKFTMG-YHFTCATCG 583
               C  C      D      C KC     + +  I  K + G YH  C TCG
Sbjct: 362 DLYWCQTC-----YDNKYAVKCKKCR----KPILGISVKGSDGEYHSQCWTCG 405



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEGE 257
           C  CG       +I++++G+  H  CF C  C +      FY  EG+
Sbjct: 258 CHSCGGSLRAG-RIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +2

Query: 299 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGL 478
           CA CG+ + G+ ++A+ + +H  CFRC +CN  +A   F          V          
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRR 175

Query: 479 QNYMCHKCHG*LTENLYV--IGEKFTMGYHFTCATC 580
            + +C  C G      Y+  + +KF +  HFTC+ C
Sbjct: 176 LDLLCASC-GMALRGYYITALNKKFHI-EHFTCSLC 209



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 263 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEEC-NVELADAGFIKHAGRAL 439
           CE D+       CA CG  + G  I A+N  +H   F C  C  V   +  + ++ G+  
Sbjct: 168 CETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVY 227

Query: 440 CH 445
           CH
Sbjct: 228 CH 229



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +2

Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGRVIK----AMNSNWHPAC 370
           G+ YC   +  LFA  C  C   ++ + ++     ++ NWH  C
Sbjct: 224 GKVYCHYHYSTLFAARCCGCDGPILRQFVEVYRNGVSQNWHVPC 267



 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 212
           C  CG     + + V + G ++H  CF C  C
Sbjct: 116 CASCGQVI--SGQYVRALGNIYHLECFRCHDC 145


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 78  SLFLATMSLDNMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 212
           S+  +  S  +  C RCG  F+  E  ++  G +WH +CF C +C
Sbjct: 6   SISKSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKC 50



 Score = 34.3 bits (75), Expect = 0.015
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +2

Query: 290 APCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVC 451
           A  C  C   +    + +   ++H  CFRC +C  ++ D+ F +      C+ C
Sbjct: 75  AHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
 Frame = +2

Query: 299 CAKCGEFVIGRV--IKAMNSNWHPACFRCEECN--VELADAGFIKHA-GRALC----HVC 451
           C +CG+    R   I      WH  CF C +C+  +E +D   ++ + GR +C    H C
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSCAHTC 78

Query: 452 NA---RIK----ADGLQNY--MCHKCH 505
            A   RIK      G  +Y   C +CH
Sbjct: 79  TACRMRIKDYALMSGYDSYHRECFRCH 105


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 81  LFLATMSLDNMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 212
           L L T S    +C +C +   P+   V   G+ WH++CF C  C
Sbjct: 12  LSLETPSERTCFCIKCWESV-PSTSQVWFGGKCWHSDCFKCVNC 54



 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +2

Query: 299 CAKCGEFVIGRVIKAMNSN-WHPACFRCEECNVEL 400
           C KC E V            WH  CF+C  CN +L
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKL 58


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 625 RTIFHFSGCMIQLNSTGSTGKVIAHGKL-LPDNVKVLRQLSMALM 494
           R+ + F G  + L S G+  K++ HG+   P N ++LR     L+
Sbjct: 437 RSQWVFDGWNLVLPSVGAAIKIVVHGQFEEPQNKRLLRSFDRTLL 481


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 90  ATMSLDNMYCTRCGDG--FEPNEKIVNSNGELWH 185
           AT S+ N +CT+C D   F   ++I+ ++ E  H
Sbjct: 58  ATNSIINKFCTQCSDNDEFPTPKQIMETDVETLH 91


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 294 GANKTWKSCSQYFLPQIHRRHHQETCESTGHKQNNLYAIILHW 166
           G+   W +    F+ +  R     T  ++G  Q  LYA+  HW
Sbjct: 302 GSRVGWFTAQPLFIERGLRAAETATQSASGISQGILYAMFKHW 344


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 502 ALMTHVVLQPIRFDTRVTYMAQCSTSMLDKTGICKLYITLF 380
           AL  +  L+     TR  ++A+C T   +   IC+ Y + F
Sbjct: 24  ALGKYAELKTYSDGTREDFLAKCKTEFQNVKAICRTYNSKF 64


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 565 KVIAHGKLLPDNVKVLRQLSMALMTHVV 482
           + + H KL PDN   L   S+ L+ H++
Sbjct: 439 RTLHHVKLHPDNKSRLENFSVILLQHIL 466


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -1

Query: 505 MALMTHVVLQPIRFDTRVTYMAQCSTSMLDKTGICKL----YITLFTSEAGRMP 356
           + L+T  +++PIR       +  CST M  + GI  L    Y TL+T E    P
Sbjct: 259 LKLVTPALMRPIRMLFTQPIVILCSTYMAIQYGILYLVLTTYPTLWTEEYHERP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,218
Number of Sequences: 5004
Number of extensions: 64298
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)