Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060675.seq
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 63 2e-10
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 60 1e-09
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 51 7e-07
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22) 49 3e-06
SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 46 3e-05
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 45 4e-05
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 42 4e-04
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 41 0.001
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 40 0.001
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 38 0.007
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 37 0.016
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 36 0.027
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 35 0.048
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 35 0.048
SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14) 34 0.11
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 32 0.34
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08) 30 1.8
SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9) 30 1.8
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06) 29 3.1
SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026) 28 5.5
SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.5
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 28 5.5
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.2
SB_12353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 28 7.2
SB_39679| Best HMM Match : DNA_ligase_A_M (HMM E-Value=2) 27 9.6
SB_23100| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 27 9.6
SB_8400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 76.2 bits (179), Expect = 2e-14
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +2
Query: 263 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRA-L 439
C +D + A G+FVIGRVIKAM +NWHP CFRCE CN LAD GF+K+AG +
Sbjct: 2 CTRDHTLKQAKAYFLMGKFVIGRVIKAMQANWHPDCFRCEICNDCLADTGFVKNAGSTYI 61
Query: 440 CHVCNARIKADGLQ--NYMCHKCHG*LTEN-LYVIGEKFTMGYHFTCATC 580
+ D + +Y C C + + ++ +G+ + + HF CA C
Sbjct: 62 PEGEHIMYMGDPVHPWHYNCFCCGRPVEDRVVHALGKAWHV-EHFVCAKC 110
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEG 254
C CG E +++V++ G+ WH FVCA+C + F +YE +G
Sbjct: 81 CFCCGRPVE--DRVVHALGKAWHVEHFVCAKCEKPFYGHRYYERKG 124
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = +2
Query: 299 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGL 478
C CG V RV+ A+ WH F C +C + + G A C + D
Sbjct: 81 CFCCGRPVEDRVVHALGKAWHVEHFVCAKCEKPFYGHRYYERKGLAYCETHYNELYGD-- 138
Query: 479 QNYMCHKCHG*LT 517
+C +C+ +T
Sbjct: 139 ---ICFECNKAIT 148
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +2
Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAG 430
G+ YCE+D+ FAP CA C ++ + A++ WHP F C EC D GF + G
Sbjct: 325 GKPYCERDYHDTFAPRCAYCNGPILDSCVTALDQTWHPEHFVCAECGNPFGDTGFHERDG 384
Query: 431 RALC 442
+ C
Sbjct: 385 KPFC 388
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/95 (29%), Positives = 40/95 (42%)
Frame = +2
Query: 299 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGL 478
CA C + +IG+V A+ WHP F C C L F + G+ C R D
Sbjct: 282 CAACNKPIIGQVCTALGKTWHPEHFACVACEAPLGTQNFFERDGKPYCE----RDYHDTF 337
Query: 479 QNYMCHKCHG*LTENLYVIGEKFTMGYHFTCATCG 583
C C+G + ++ ++ HF CA CG
Sbjct: 338 AP-RCAYCNGPILDSCVTALDQTWHPEHFVCAECG 371
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 150 EKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEGE 257
+ V + + WH FVCA+C F D F+E +G+
Sbjct: 350 DSCVTALDQTWHPEHFVCAECGNPFGDTGFHERDGK 385
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = +2
Query: 254 RKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGR 433
R+ C F FA C KC + + ++ S +H CF C C+ LA + F K GR
Sbjct: 222 RRLCNNCFDSKFAKVCVKCNQVIKTSSVQHAGSTYHSECFTCHHCDKPLAGSPFTKQEGR 281
Query: 434 ALCHVCNARIKADGLQNYMCHKCHG*LTENLYVIG--EKFTMGYHFTCATCGVEL 592
+C C A C CH + N + EK+ FTC C L
Sbjct: 282 NVCQNCYRERYAK-----RCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPL 331
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = +2
Query: 299 CAKC-GEFVIG-RVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKAD 472
CA C G+F G + + + +H CF C+EC + FI+ R LC+ C D
Sbjct: 176 CAACNGDFAPGEKKVGYQSKTFHDKCFICDECKQPIGSKQFIRRDERRLCNNC-----FD 230
Query: 473 GLQNYMCHKCHG*L-TENLYVIGEKFTMGYHFTCATC 580
+C KC+ + T ++ G YH C TC
Sbjct: 231 SKFAKVCVKCNQVIKTSSVQHAGST----YHSECFTC 263
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIG--RVIKAMNSNWHPACFRCEECNVELADAGFIKH 424
GR C+ ++ +A C C + G + + +H CF C +CN LA F
Sbjct: 280 GRNVCQNCYRERYAKRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPLAGEKFRIR 339
Query: 425 AGRALCHVCN 454
G +C C+
Sbjct: 340 DGEKICLPCD 349
Score = 36.3 bits (80), Expect = 0.021
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 212
C C F P EK V + +H CF+C +C
Sbjct: 176 CAACNGDFAPGEKKVGYQSKTFHDKCFICDEC 207
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEGESI 263
C C + E N K V + + +H CF C +C + F +GE I
Sbjct: 296 CGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPLAGEKFRIRDGEKI 344
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 51.2 bits (117), Expect = 7e-07
Identities = 33/111 (29%), Positives = 45/111 (40%)
Frame = +2
Query: 260 YCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRAL 439
+C +Q F+ CA CGE ++ + WH ACF C C+ LA A F G
Sbjct: 450 FCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAAFSVRDGCRY 509
Query: 440 CHVCNARIKADGLQNYMCHKCHG*LTENLYVIGEKFTMGYHFTCATCGVEL 592
C C + A Q +C K + Y + E F C+ CG L
Sbjct: 510 CMECYGKFYAK--QCEICLKAI--VGGEYYTLEESNFHKECFMCSRCGRSL 556
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMN-SNWHPACFRCEECNVELADAGFIKHA 427
G +YC + + +A C C + ++G + SN+H CF C C LA GF++
Sbjct: 506 GCRYCMECYGKFYAKQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEGFVREG 565
Query: 428 GRALCHVC 451
LC C
Sbjct: 566 DELLCGDC 573
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/96 (25%), Positives = 34/96 (35%)
Frame = +2
Query: 299 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGL 478
C K G AMN NWH F+C+ C+ + FI + +C C A
Sbjct: 280 CLKALLIFTGEYTVAMNKNWHLGHFQCQTCDHSITGRQFIVRGDKPVCTDCFKDSYA--- 336
Query: 479 QNYMCHKCHG*LTENLYVIGEKFTMGYHFTCATCGV 586
+ C CH + I +H C C +
Sbjct: 337 --HECEACHQKIGPESRDISSDDDRHWHDKCFICDI 370
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +2
Query: 263 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSN--WHPACFRCEECNVELADAGFIKHAGRA 436
C + + C CG+ + + S WH CFRC C + +GF+
Sbjct: 390 CNNCYVANYQKECFACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTSGFVPKDDTF 449
Query: 437 LCHVC 451
C C
Sbjct: 450 FCPGC 454
Score = 35.9 bits (79), Expect = 0.027
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 212
C CG + + +G WH NCF CA C
Sbjct: 402 CFACGQMIDSGASRLEYSGNFWHENCFRCANC 433
Score = 35.5 bits (78), Expect = 0.036
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = +3
Query: 66 LPNASLFLATMSLDNMYCTRCGDGFEPN-EKIVNSNGELWHTNCFVCAQCFRMFPDGVFY 242
+P F + + RC EP E V NGE WH CF C C R F
Sbjct: 443 VPKDDTFFCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAAFS 502
Query: 243 EFEG-ESIVNRISKFY 287
+G + KFY
Sbjct: 503 VRDGCRYCMECYGKFY 518
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGEL-WHTNCFVCAQCFR-MFPDGVFYEFEGESIVN 269
C C P + ++S+ + WH CF+C C R + DG F + + + N
Sbjct: 339 CEACHQKIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYRDQILCN 391
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 263 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSN----WHPACFRCEECNVEL-ADAGFIKHA 427
C F+ +A C C + IG + ++S+ WH CF C+ C L +D F +
Sbjct: 327 CTDCFKDSYAHECEACHQ-KIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYR 385
Query: 428 GRALCHVC 451
+ LC+ C
Sbjct: 386 DQILCNNC 393
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 51.2 bits (117), Expect = 7e-07
Identities = 33/111 (29%), Positives = 45/111 (40%)
Frame = +2
Query: 260 YCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRAL 439
+C +Q F+ CA CGE ++ + WH ACF C C+ LA A F G
Sbjct: 38 FCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAAFSVRDGCRY 97
Query: 440 CHVCNARIKADGLQNYMCHKCHG*LTENLYVIGEKFTMGYHFTCATCGVEL 592
C C + A Q +C K + Y + E F C+ CG L
Sbjct: 98 CMECYGKFYAK--QCEICLKAI--VGGEYYTLEESNFHKECFMCSRCGRSL 144
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMN-SNWHPACFRCEECNVELADAGFIKHA 427
G +YC + + +A C C + ++G + SN+H CF C C LA GF++
Sbjct: 94 GCRYCMECYGKFYAKQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLASEGFVREG 153
Query: 428 GRALCHVC 451
LC C
Sbjct: 154 DELLCGDC 161
Score = 35.5 bits (78), Expect = 0.036
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = +3
Query: 66 LPNASLFLATMSLDNMYCTRCGDGFEPN-EKIVNSNGELWHTNCFVCAQCFRMFPDGVFY 242
+P F + + RC EP E V NGE WH CF C C R F
Sbjct: 31 VPKDDTFFCPGCYQSKFSKRCASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAAFS 90
Query: 243 EFEG-ESIVNRISKFY 287
+G + KFY
Sbjct: 91 VRDGCRYCMECYGKFY 106
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 356 WHPACFRCEECNVELADAGFIKHAGRALCHVC 451
WH CFRC C + +GF+ C C
Sbjct: 11 WHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 168 NGELWHTNCFVCAQC 212
+G WH NCF CA C
Sbjct: 7 SGNFWHENCFRCANC 21
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +2
Query: 260 YCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGR-A 436
YC+ D+Q + C C ++ G +I N+H ACF C C + I G
Sbjct: 6 YCKDDYQNQYGKKCDSCQLYLEGEIISIHGKNFHEACFACNSCRQPFPPSDKIIFTGTDY 65
Query: 437 LCHVCNARIKA--DGLQNYMCHKCHG 508
LC CN KA + + H C G
Sbjct: 66 LCQTCNNAPKAPTTKVSSPYLHTCAG 91
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGRVIK 340
G+ YCE+D+Q LF CA C ++ G+V++
Sbjct: 132 GKPYCEKDYQELFGVTCAACNGYITGKVLQ 161
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 299 CAKCGEFVIG-RVIKAMNSNWHPACFRCEECNVELA 403
CA CGE + G + + A+ WH CF C +C+ L+
Sbjct: 89 CAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLLS 124
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 212
C CG+ + ++ ++ + WH CF C +C
Sbjct: 89 CAGCGEAIKGSQALLALEKQ-WHLWCFSCTKC 119
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 153 KIVNSNGELWHTNCFVCAQCFRMFP 227
+I++ +G+ +H CF C C + FP
Sbjct: 29 EIISIHGKNFHEACFACNSCRQPFP 53
>SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22)
Length = 81
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +2
Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAG 430
GR YCE + C C + + GR I AM+ +HP F C C +L F +
Sbjct: 9 GRPYCEMHYHAKRGTLCYSCQKPITGRCITAMHRKFHPEHFVCAFCLKQLNKGTFKEQND 68
Query: 431 RALCHVCNARI 463
+ CH C ++
Sbjct: 69 KPYCHPCFVKL 79
>SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 48.0 bits (109), Expect = 6e-06
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = +2
Query: 254 RKYCEQDFQVLFAPCCAKCGEFVIGRV--IKAMNSNWHPACFRCEECNVELADAGFIKHA 427
RK C+ ++ +A C C +++ G V + +H CF C C LA F +H
Sbjct: 46 RKVCKDCNRIHYAKRCVACRQYIEGTVKFVTRDEGTYHSDCFVCSRCRKPLAGKTFTEHE 105
Query: 428 GRALCHVCNARIKADGLQNYMCHKCHG*LTENLYVIGEKFTMGYHFTCATC 580
G +C C A C+ CH L N+ + + YH C C
Sbjct: 106 GSWVCDDCYHDRYAK-----RCNMCHQSLEANVEFVKYDEKL-YHNECFVC 150
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +2
Query: 299 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCN 454
C C + + V++ N H CF C C LA F R +C CN
Sbjct: 2 CNSCFKTITSSVVRYQNKPHHSECFVCFHCRTPLAGKTFQMRDDRKVCKDCN 53
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEG 254
C C E K V + +H++CFVC++C + F E EG
Sbjct: 61 CVACRQYIEGTVKFVTRDEGTYHSDCFVCSRCRKPLAGKTFTEHEG 106
Score = 31.5 bits (68), Expect = 0.59
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVC 203
C C E N + V + +L+H CFVC
Sbjct: 122 CNMCHQSLEANVEFVKYDEKLYHNECFVC 150
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 251 GRKYCEQDFQVLFAPCCAKCGEFVIGR--VIKAMNSNWHPACFRCEECNVELADA-GFIK 421
G+ YC+ D+ F CA+CG + V +A N +H ACF C+ C +L+ F
Sbjct: 147 GKIYCKADYARQFGTKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFAL 206
Query: 422 HAGRALC 442
G LC
Sbjct: 207 KDGHVLC 213
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDG 233
C RCG N+ + + ++H CF C C R G
Sbjct: 163 CARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTG 201
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 260 YCEQDFQVLFAPCCAKCGEFVIGRVI-KAMNSNWHPACFRCEECNVELADAGFIKHAGRA 436
YC + + F P CA C E + +A + NWH F C EC+ +L ++ G+
Sbjct: 361 YCGRHYAEQFKPRCAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLGGQLYVARGGQP 420
Query: 437 LCHVC 451
C C
Sbjct: 421 HCLEC 425
Score = 34.7 bits (76), Expect = 0.063
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 63 SLPNASLFLATMSLDNMYCTRCGDGFEPNEKIVNSN--GE--LWHTNCFVCAQCFRMFPD 230
SL + +A + L M C RC E V ++ GE WH CFVC C + D
Sbjct: 291 SLTESCRKVALVLLITMNCFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNNLLVD 350
Query: 231 GVFYEFEG 254
+++ +G
Sbjct: 351 LIYFYKDG 358
Score = 31.5 bits (68), Expect = 0.59
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Frame = +2
Query: 356 WHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGLQNYMCHKCHG*LTENLYVI 535
WHP CF C CN L D + G C R A+ + C C + Y
Sbjct: 334 WHPGCFVCTVCNNLLVDLIYFYKDGVIYC----GRHYAEQFKP-RCAACDELIFSETYTQ 388
Query: 536 GEKFTMGY-HFTCATCGVEL 592
E HF C C +L
Sbjct: 389 AEDRNWHQRHFCCLECDRDL 408
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 41.9 bits (94), Expect = 4e-04
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEG 254
C+ C E ++ + +++H NCF C +C RM G ++ G
Sbjct: 310 CSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRG 355
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 299 CAKCGEFVIGR-VIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADG 475
C C E + + V++A+ S WH C +CE C+ L D G ++ L ++ G
Sbjct: 17 CRSCNEPISDKYVLQALGSYWHEGCLKCECCDSRLGDIGSSLYSKANLILCKRDYLRLFG 76
Query: 476 LQNYMCHKCHG*LTENLYVIGEKFTMGYHFTCATC 580
+ +C C+ + V+ + YH C C
Sbjct: 77 IPG-VCSHCNKPIAAFELVMRAR-NNAYHIECFGC 109
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDG--VFYEFEGESIVNRISKFYL 290
C+ C G PN+ + + ++H +CFVC+ C R G ++Y +G S + R ++
Sbjct: 64 CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDG-SFICRDDYYHS 122
Query: 291 H 293
H
Sbjct: 123 H 123
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 YCEQDFQVLFAPCCAKCGEFVIG-RVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRA 436
YC + P CA C E + + +A +S WH F C EC+ L ++ +
Sbjct: 130 YCGRHHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMRYVMRDNKP 189
Query: 437 LCHVCNARIKAD 472
C C + A+
Sbjct: 190 YCCHCFESLYAE 201
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 99 SLDNMYCTRCGDGFEPNEKIVNSNGELWH-TN-CFVCAQC 212
SL +C CG+ EP+ + NG+ WH TN CF C C
Sbjct: 197 SLYAEFCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTC 236
Score = 35.5 bits (78), Expect = 0.036
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 254 RKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNS--NWHPA--CFRCEECNVELADAGFIK 421
+ YC F+ L+A C CGE + + ++ +WH CF C C L F+
Sbjct: 188 KPYCCHCFESLYAEFCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCGKALLGLPFLP 247
Query: 422 HAGRALC 442
+G C
Sbjct: 248 KSGEIYC 254
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSN--GE--LWHTNCFVCAQCFRMFPDGVFY 242
C CG+ V ++ G+ WH +CF+C C + D +++
Sbjct: 78 CKECGECVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVDLIYF 123
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/48 (22%), Positives = 17/48 (35%)
Frame = +2
Query: 299 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALC 442
C G + ++ WH +CF C C L D + + C
Sbjct: 84 CVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVDLIYFYKDSKVYC 131
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 293 PCCAKCGEFVI-GRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCH 445
P C +CG+ V + N +H CF C++C +L H G+ CH
Sbjct: 42 PKCPRCGDNVYHAEEVSMENHKFHKKCFSCKDCRKKLDSTNAASHDGK--CH 91
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 72 NASLFLATMSLDN-MYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQ 209
NA L TMS M C RC D + + ++ G+ WH +CF CA+
Sbjct: 281 NADLPTRTMSEGAPMRCGRC-DKMCYHAEGISMAGKRWHKSCFACAE 326
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 299 CAKCGE--FVIGRVIKAMNSNWHPACFRCEECNVEL 400
C +C + + +V+ A NWH +CF C +C+ +L
Sbjct: 218 CPRCEKRAYAAEQVLGA-GFNWHKSCFNCYKCHKKL 252
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFR 218
C RC E+++ + G WH +CF C +C +
Sbjct: 218 CPRCEKRAYAAEQVLGA-GFNWHKSCFNCYKCHK 250
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 35.9 bits (79), Expect = 0.027
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDG 233
C +C F N+ ++ + +++H +CF C C R G
Sbjct: 84 CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPG 122
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 281 VLFAPCCAKCG-EFVIGR-VIKAMNSNWHPACFRCEECNVEL 400
VLF CAKC F V++A N +H CFRC C+ +L
Sbjct: 78 VLFGTKCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQL 119
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 35.1 bits (77), Expect = 0.048
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDG 233
C+ C NE ++ + G ++H +CFVC C + G
Sbjct: 7 CSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKG 45
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 35.1 bits (77), Expect = 0.048
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDG 233
C+ C NE ++ + G ++H +CFVC C + G
Sbjct: 105 CSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKG 143
>SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14)
Length = 82
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 299 CAKCGEFVIGRVIK-AMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADG 475
CA CGE I K A+ +H ACFRC C L+ F C K D
Sbjct: 11 CATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERLS-TDFYARGSELYC-------KKDY 62
Query: 476 LQ--NYMCHKC 502
L N +CH C
Sbjct: 63 LSKFNSVCHIC 73
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 299 CAKCGEFVIGRVIK-AMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVC 451
C +C + V + A+ WH +C C+ CN L G C C
Sbjct: 10 CPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLDSTNLADKDGEIYCKGC 61
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 299 CAKCGE--FVIGRVIKAMNSNWHPACFRCEECNVEL 400
C CGE +++ R++ A +H ACFRC CN L
Sbjct: 611 CLICGERVYLMERLV-AERRLFHRACFRCSRCNSSL 645
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 117 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEF-EGES 260
C CG+ E++V + L+H CF C++C G + F E ES
Sbjct: 611 CLICGERVYLMERLV-AERRLFHRACFRCSRCNSSLRAGTYTFFPESES 658
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 99 SLDNMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC 212
S ++ C CG + E++ N ++H CFVCA C
Sbjct: 239 SFESNRCDSCGKSVDILERVAVEN-HVFHKACFVCAIC 275
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 299 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVEL 400
C CG+ V I + N +H ACF C CNV L
Sbjct: 245 CDSCGKSVDILERVAVENHVFHKACFVCAICNVWL 279
>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
Length = 197
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 299 CAKCGEFV-IGRVIKAMNSNWHPACFRCEECNVEL 400
C +C + V KA +WH C C+ CN L
Sbjct: 5 CPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRL 39
>SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)
Length = 451
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 474 PSALIRALHTWH--NARPACLIKPASASSTLHSSHRKQA 364
P+ AL WH N +CL+KP ST + H+ QA
Sbjct: 9 PTTSSGALPLWHPPNVTNSCLVKPELQFSTANDFHQSQA 47
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.1 bits (62), Expect = 3.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 356 WHPACFRCEECNVEL 400
WH CF+CE C + L
Sbjct: 213 WHKGCFKCESCGMTL 227
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 371 FRCEECNVELADAGFIKHAGRALCHVCNARIKADGLQNYMCHKCHG*LTE-NLYVIGEKF 547
F CE+C + A + C R DG+++Y+C+ C+ T+ N V +
Sbjct: 763 FSCEKCGKKFAQ----------VASYCRHRKSHDGIKDYLCNICNKKFTQSNSLVRHMRS 812
Query: 548 TMGYHFTCATC 580
G F C C
Sbjct: 813 HTGKKFDCPEC 823
>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
Length = 273
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 263 CEQDFQVLFAPCCAKCGEF-VIGRVIKAMNSNWHPACFRC---EECNVELADAGFIKHAG 430
C D Q + P C C + GR I + + H C E+C+ ++ D+G+ K AG
Sbjct: 196 CRVDCQRWWLPGCRSCDDRDPWGREIVSSCTYGHMYCALSNDWEKCSWKVLDSGYSKCAG 255
Query: 431 RALCHVCNAR 460
A+ V + R
Sbjct: 256 EAVGEVVSKR 265
>SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026)
Length = 56
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 293 PCCAKCGEFVIGRVIKAM-NSNWHPACFRCEECNVEL 400
P C KC + V +A+ +H CF C CN L
Sbjct: 10 PKCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSL 46
>SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 84 FLATMSLDNMYCTRCGDGFEPNEKIVNS 167
FLATMS + Y TRC +P+ V S
Sbjct: 825 FLATMSAEQAYGTRCSTQLQPDRGGVES 852
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 354 LEFIAFITRPITNSPHFAQHGANKTWKSCSQYFLPQIHRRH 232
L F I P+T H HG ++T++ + F QI + H
Sbjct: 2143 LHFRMLIIPPVTVMNHSILHGLDETYRVLDRQFTAQIDKLH 2183
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 354 LEFIAFITRPITNSPHFAQHGANKTWKSCSQYFLPQIHRRH 232
L F I P+T H HG ++T++ + F QI + H
Sbjct: 100 LHFRMLIIPPVTVMNHSILHGLDETYRVLDRQFTAQIDKLH 140
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 320 VIGRVIKAMNSNWH-PACFRCEECNVELAD 406
V+GR+++ + + WH C R E C ++ D
Sbjct: 513 VVGRLVRFLPTTWHNRICMRVEICGCKVCD 542
>SB_12353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 296 CCAKCGEFVIGRVIKAMNSNWHPACFR 376
CC C E+ I S WH C R
Sbjct: 81 CCGNCTEYAFSDSITTTVSKWHLVCDR 107
>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = -2
Query: 342 AFITRPITNSPHFAQHGANKTWKSCSQYFLPQIHRRHHQETCESTGHKQNNLYAIILHWS 163
A T I H+ QH ++ T ++ L +H H T H +++ A H++
Sbjct: 162 AHYTSHIARYSHYTQHYSHSTLRAPHATLLT-LHATH-------TTHYPSHI-ARYSHYT 212
Query: 162 SQFSHLAQIHPHSEYNTYY 106
+SH PH+ + T+Y
Sbjct: 213 QHYSHSTLRTPHATHTTHY 231
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = -2
Query: 300 QHGANKTWKSCSQYFLPQIHRRHHQETCESTGHKQNNLYAIILHWSSQFSHLAQIHPHSE 121
Q ++W +Y + +H RHH S + +II H + LA H H
Sbjct: 366 QPDQGQSWSPHKEYNVTFLHHRHHPTGQSSLTSSSSPHLSIITHIIIIITPLANHHSHHH 425
Query: 120 YN 115
++
Sbjct: 426 HH 427
>SB_39679| Best HMM Match : DNA_ligase_A_M (HMM E-Value=2)
Length = 202
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 478 QPIRFDTRVTYMAQCSTSMLDKTG--ICKLYITLFTSEAGRMPI 353
QPI F +R A+ S LDK G + LY FT G P+
Sbjct: 7 QPIAFSSRALNTAEQKYSQLDKEGASVMFLYGRHFTIVTGHKPL 50
>SB_23100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 281 VLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECN 391
VL +P KC + ++ +V++ M+ HP F CN
Sbjct: 70 VLQSPQDRKCLQNIVKQVLREMSDTSHPQVFVMSGCN 106
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +2
Query: 299 CAKCGEFV---IGRVIKAMNSNWHPACFRCEECNVELADA 409
CA C + + + + + WH CF C C+V A
Sbjct: 2031 CASCSQPIRKSMAVYVSELKRYWHDDCFSCVVCHVRFGTA 2070
>SB_8400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 380 EECNVELADAGFIKHAGRALCHVCNARIKADGLQNYMC 493
++ NV A G I H GR VC R+K GLQ C
Sbjct: 17 QQDNVANASEGEIGHKGRVFWFVC--RVKRIGLQKGNC 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,511,937
Number of Sequences: 59808
Number of extensions: 487762
Number of successful extensions: 1447
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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