Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060672.seq
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 72 7e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 42 8e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 37 0.003
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 35 0.013
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.16
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 30 0.27
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 30 0.27
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.48
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 0.63
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.84
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 1.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.5
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 1.9
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 1.9
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.6
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 3.4
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 4.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 7.8
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 7.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 72.1 bits (169), Expect = 7e-14
Identities = 46/143 (32%), Positives = 59/143 (41%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*L 437
DW + +L PF K+FY H V RS EV EYR E+ V G + + F
Sbjct: 73 DWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNY 132
Query: 438 CATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRR 617
K G + +MSG+++VG+ K + L
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
Query: 618 GDGPIALVLGATRELAQQISASC 686
GDGPI LVL TRELA QI C
Sbjct: 193 GDGPIVLVLAPTRELAVQIQQEC 215
Score = 52.4 bits (120), Expect = 6e-08
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G+ V + FEEA FP+YV + VK +G++ PTPIQ Q WP+
Sbjct: 114 GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPM 155
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 41.9 bits (94), Expect = 8e-05
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGR*GS*SYSIL*RSKFS* 434
D ++ + F K+FY + SP EV+E R + + + + G + + S
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 435 LCATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFR 614
+ G ++ + + + SG++++GV K K R +
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 615 RGDGPIALVLGATRELAQQISASC 686
G+GPIA+++ TRELA QI C
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFREC 511
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPI 610
+TGSGKT+A++LP HI +Q P+
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPL 486
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 451 VKTMGYKEPTPIQAQGWPIV 510
+ ++GY++PT IQAQ P +
Sbjct: 433 INSLGYEKPTSIQAQAIPAI 452
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISE 616
+TGSGKT A+I+P I+ I+ PP++E
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTE 319
Score = 33.1 bits (72), Expect = 0.039
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
G ++ N ++ +EEA P + + +K + YKEP+ IQ P++
Sbjct: 241 GDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVL 283
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 624 GPIALVLGATRELAQQI 674
GP A+VL TRELAQQI
Sbjct: 325 GPYAVVLAPTRELAQQI 341
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
I F+E + +++G+K YKEPTPIQA WP + R
Sbjct: 166 ILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHIN 595
+TGSGKT+A+ +PA+ ++N
Sbjct: 210 ETGSGKTVAFGIPALQYLN 228
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQP 604
QTGSGKTLAY+LP + + P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLP 207
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
F+E D + + + +G+K PTPIQ + P+V +R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQP 604
QTGSGKT A+ LP I + N P
Sbjct: 91 QTGSGKTAAFALPVIQELWNNP 112
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 397 NXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
N + FEE N + + +G+ GY+ P+ +Q++ +C R
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGR 59
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
+ F ++ Q +K GY +PTP+Q PIV
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIV 203
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 518 KEFSWRTQTGSGKTLAYILPAIVHINNQPPISE 616
K+ + +TGSGKT AY++P + + Q I E
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDE 84
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 29.1 bits (62), Expect = 0.63
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINN 598
+TGSGKT A+++P I H+ +
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS 133
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 28.7 bits (61), Expect = 0.84
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
F+ N +++ V G+K+ TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 542 TGSGKTLAYILP 577
TGSGKTLAY+LP
Sbjct: 47 TGSGKTLAYLLP 58
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISER*WSDCFGLG 646
+TGSGKTLA+I+P I ++ + W+ GLG
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKK------WTSLDGLG 113
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINNQPP 607
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINNQPP 607
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 539 QTGSGKTLAYILPAI 583
+TGSGKTLA+++P I
Sbjct: 134 KTGSGKTLAFLIPTI 148
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 1.9
Identities = 8/37 (21%), Positives = 23/37 (62%)
Frame = +2
Query: 164 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVARLGFCF 274
+ D++ + + + + +NS+++ +C+ ++GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 542 TGSGKTLAYILPAI 583
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 533 RTQTGSGKTLAYILPAIVH 589
+ TGSGKTLA+ +P + H
Sbjct: 165 KADTGSGKTLAFGIPILEH 183
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINNQPP 607
TGSGKT+AY+ P + + P
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP 113
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -3
Query: 659 LSGSAQDQSNRTITSPK*AVGCLCAQWLARCRPTFCRNPFEYAN*ILSRHTIGQP 495
+ G + + + + SP VG L AQ + N F YA T+G P
Sbjct: 1048 IMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVP 1102
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINNQP 604
TGSGKT A+I+P + + +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQP 604
+TGSGKT A+ LP I + P
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP 73
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 463 PLSLHLVAHNQENL--LLQSIE 404
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,905
Number of Sequences: 5004
Number of extensions: 55355
Number of successful extensions: 174
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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