Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060672.seq
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 41 8e-04
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 40 0.003
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 40 0.003
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 36 0.023
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 34 0.094
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 29 2.7
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 29 3.6
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012) 28 6.2
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.2
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 60.9 bits (141), Expect = 1e-09
Identities = 38/140 (27%), Positives = 60/140 (42%)
Frame = +3
Query: 255 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS* 434
P+ + +PFNKNFY+ HP + K+S E+++ R + VSG + F
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 435 LCATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFR 614
+ + L ++SG++++G+ K K L +
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 615 RGDGPIALVLGATRELAQQI 674
GDGPI L+ TREL QQI
Sbjct: 587 VGDGPIVLICAPTRELCQQI 606
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPI 610
+TGSGKT A++ PA+VHI +QP +
Sbjct: 562 KTGSGKTAAFLWPALVHIMDQPEL 585
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 495
G V + FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 75 GRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 34.7 bits (76), Expect = 0.071
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 606 LFRRGDGPIALVLGATRELAQQI 674
L + GDGPI LVL TRELAQQ+
Sbjct: 126 LLQPGDGPIVLVLCPTRELAQQV 148
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 391 VHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
V Q E FPDY+ V+ GY PTPIQ Q P++
Sbjct: 158 VETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPLM 197
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
I+ ++EA PD + + V +GYK+PTPIQ Q PI
Sbjct: 100 IRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPI 134
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 624 GPIALVLGATRELAQQI 674
GP AL+L TRELAQQI
Sbjct: 178 GPYALILAPTRELAQQI 194
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPI 610
+TGSGKT A+ +P +V I P I
Sbjct: 146 ETGSGKTAAFAIPLLVWIMGLPKI 169
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 36.3 bits (80), Expect = 0.023
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Frame = +3
Query: 285 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*LCATRCKDNG 464
F ++YD + V + S V+E R + + + G +T
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 465 LQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*T-TNRLFRRGDGPIALV 641
Q L+ MSG++++G+ + K S PLC T GD P+AL+
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLCMLLRTKAPSNPGDTPVALI 150
Query: 642 LGATRELAQQI 674
L TREL QQ+
Sbjct: 151 LTPTRELMQQV 161
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
I FEEAN + V+ YK+PTP+Q PIV R
Sbjct: 710 INSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINN 598
QTGSGKT A++LP + + N
Sbjct: 756 QTGSGKTAAFLLPVMTSMMN 775
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
I FEEAN + V+ YK+PTP+Q PIV R
Sbjct: 133 INSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGR 386
D +V QPF K+FY P + K +P E +E+R + E + V G+
Sbjct: 55 DHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGK 98
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 451 VKTMGYKEPTPIQAQGWPIV 510
+K Y++PTPIQAQ P++
Sbjct: 120 LKKNSYEKPTPIQAQAIPVI 139
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
I FE+ + + + V GYK+PTP+Q PIV
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIV 909
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPP 607
QTGSGKT A+++P + I + P
Sbjct: 920 QTGSGKTAAFLIPILSRIYMEGP 942
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
I F E F + + + GY+ PTP+Q PIV R
Sbjct: 478 ITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQ 601
QTGSGKT AY+LP + + Q
Sbjct: 524 QTGSGKTAAYMLPVLTSLIKQ 544
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
G V + + F +F + + + + GY PTPIQ Q P++
Sbjct: 188 GEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVL 230
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVH 589
QTGSGKTLAY+ P +VH
Sbjct: 423 QTGSGKTLAYLAP-LVH 438
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
+TGSGKTLA+ +P I HI
Sbjct: 176 ETGSGKTLAFGIPIIQHI 193
>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
Length = 1153
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 453 KDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKR 560
K +GL+R + S RLA G +L +K VP +R
Sbjct: 576 KGSGLERPKSLSLKRLASGSLGLHLAKFVKSVPVQR 611
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 247 CSDLQRILFSHQILQILQIYCHRC-QIETN 161
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 178 CQIETNYRRICCLLQIWN-HRFHGYYSS 98
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,184,220
Number of Sequences: 59808
Number of extensions: 398563
Number of successful extensions: 1030
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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