Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060672.seq
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 41 0.001
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.007
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 37 0.016
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 37 0.016
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 37 0.016
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 36 0.027
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 33 0.19
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 33 0.25
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.44
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.44
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.44
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.78
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 31 1.0
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 30 1.8
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 4.1
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 4.1
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 4.1
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 4.1
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 5.5
U00031-8|AAK18869.1| 201|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 28 5.5
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 28 5.5
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 7.2
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 9.6
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 9.6
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 9.6
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 9.6
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 54.4 bits (125), Expect = 7e-08
Identities = 38/139 (27%), Positives = 62/139 (44%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*L 437
DW + +L P K+FY + V +R YE++++ + ++VT+ GR +
Sbjct: 81 DWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQ 140
Query: 438 CATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRR 617
Q+ S +MSG++++ + K K L T +R
Sbjct: 141 IHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQR 199
Query: 618 GDGPIALVLGATRELAQQI 674
G+GP LVL TRELAQQ+
Sbjct: 200 GEGPAVLVLLPTRELAQQV 218
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQ 601
+TGSGKTLA++LPA+VHI Q
Sbjct: 174 KTGSGKTLAFMLPALVHITKQ 194
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G V ++ +EEA FPD V Q VK +GY EPTPIQ Q PI
Sbjct: 293 GGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPI 334
Score = 31.1 bits (67), Expect = 0.78
Identities = 26/71 (36%), Positives = 34/71 (47%)
Frame = +3
Query: 462 GLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPIALV 641
GLQ D +A++ SGK +L P W TS + R R GP A++
Sbjct: 335 GLQNRDVIG---VAETGSGKTAAFLL---PLLVWITSLPKM-----ERQEHRDLGPYAII 383
Query: 642 LGATRELAQQI 674
+ TRELAQQI
Sbjct: 384 MAPTRELAQQI 394
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISER 619
+TGSGKT A++LP +V I + P + +
Sbjct: 346 ETGSGKTAAFLLPLLVWITSLPKMERQ 372
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/139 (21%), Positives = 58/139 (41%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*L 437
D + Q FNKNFY+ H + + +V +N + V G F L
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 438 CATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRR 617
+ + ++ + + ++SG++++G+ K K + +
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKA 335
Query: 618 GDGPIALVLGATRELAQQI 674
G+GP+A+++ TRELA Q+
Sbjct: 336 GEGPVAVIVVPTRELAIQV 354
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPI 610
+TGSGKT AY+ PAIVHI +QP +
Sbjct: 310 KTGSGKTAAYLWPAIVHIMDQPDL 333
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 1/142 (0%)
Frame = +3
Query: 249 ASPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGR*GS*SYSIL*RSK 425
A D V + F KNFY + + + EV+ YR + +TV G +
Sbjct: 251 AQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCG 310
Query: 426 FS*LCATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNR 605
+ K + + + + MSG++++G+ K K
Sbjct: 311 VNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQP 370
Query: 606 LFRRGDGPIALVLGATRELAQQ 671
GDGPIA++L TRELA Q
Sbjct: 371 ELEEGDGPIAVILAPTRELAMQ 392
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISE 616
+TGSGKTLA++LP HI +QP + E
Sbjct: 349 KTGSGKTLAFLLPMFRHILDQPELEE 374
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +2
Query: 536 TQTGSGKTLAYILPAIVHINNQ 601
+QTGSGKTLA++LPA++HI+ Q
Sbjct: 128 SQTGSGKTLAFLLPALLHIDAQ 149
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 385 VEVHNXIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQGWPIV 510
V++ + FE+A + G ++ G+++P+PIQ+Q WP++
Sbjct: 76 VKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLL 118
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
G V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 131 GDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 177
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
QTGSGKT A++LP I HI
Sbjct: 184 QTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
G V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 115 GDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 161
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
QTGSGKT A++LP I HI
Sbjct: 168 QTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
G V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 112 GDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 158
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
QTGSGKT A++LP I HI
Sbjct: 165 QTGSGKTAAFLLPIIQHI 182
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 504
G +V I F + + +++++ +KT GY PTP+Q P
Sbjct: 158 GDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIP 198
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 597 TNRLFRRGDGPIALVLGATRELAQQI 674
T R+ DGP+AL+L TRELA QI
Sbjct: 450 TRNKARQDDGPLALILAPTRELAAQI 475
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 453 KDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPL---CT*TTNRL-FRRG 620
K G+ A + ++SG++++G+ K T PL C +L F R
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTM-TFVLPLVMFCLEQEMKLPFMRS 264
Query: 621 DGPIALVLGATRELAQQI 674
+GP L++ +RELA+QI
Sbjct: 265 EGPFGLIIVPSRELARQI 282
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F EAN + +Q+ V GY + TPIQ P+V
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLV 375
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F EAN + +Q+ V GY + TPIQ P+V
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLV 375
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F EAN + +Q+ V GY + TPIQ P+V
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLV 375
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 113 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 229
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINNQP 604
TGSGKT+ Y+LP + + ++P
Sbjct: 165 TGSGKTICYVLPVLAAVGSKP 185
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +2
Query: 539 QTGSGKTLAYILPAI 583
+TGSGKTLA++LPAI
Sbjct: 113 KTGSGKTLAFLLPAI 127
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVH 589
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINN 598
TGSGKTLA++LP + I N
Sbjct: 55 TGSGKTLAFVLPMMRMIQN 73
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F EAN + +++ V GY + TPIQ P++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLI 586
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISER*WSDCF 637
QTGSGKT A++LP + + ++ ++ C+
Sbjct: 597 QTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F EAN + +++ V GY + TPIQ P++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLI 586
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISER*WSDCF 637
QTGSGKT A++LP + + ++ ++ C+
Sbjct: 597 QTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F EAN + +++ V GY + TPIQ P++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLI 586
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISER*WSDCF 637
QTGSGKT A++LP + + ++ ++ C+
Sbjct: 597 QTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 165 RIIAEFVASSKFGTTVSTAIIPV 97
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 165 RIIAEFVASSKFGTTVSTAIIPV 97
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>U00031-8|AAK18869.1| 201|Caenorhabditis elegans Hypothetical
protein B0361.10 protein.
Length = 201
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 474 TDAYSSSRLADSMSGKNLVGVLKRVPAKRWP 566
TDA R+A S G+ L RVPA +WP
Sbjct: 83 TDAEYQQRVAMSFLGRVLDDFTTRVPATQWP 113
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F +++ P +++ V+ GY TPIQ P+V
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLV 332
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
F +++ P +++ V+ GY TPIQ P+V
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLV 332
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 241 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 140
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = -3
Query: 659 LSGSAQDQSNRTITSPK*AVGCLCAQWLARCRPTFCRNPFEYAN*ILSRHTIGQP 495
L G + + + I P VG L AQ L N F YA T+G P
Sbjct: 1058 LLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVP 1112
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = -3
Query: 659 LSGSAQDQSNRTITSPK*AVGCLCAQWLARCRPTFCRNPFEYAN*ILSRHTIGQP 495
L G + + + I P VG L AQ L N F YA T+G P
Sbjct: 1068 LLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVP 1122
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHI 592
TGSGKTLA+++P ++ +
Sbjct: 782 TGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHI 592
TGSGKTLA+++P ++ +
Sbjct: 782 TGSGKTLAFLIPFVIKL 798
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,173
Number of Sequences: 27780
Number of extensions: 308064
Number of successful extensions: 898
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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